Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s10.

Sample reads: 133,391. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 20682.71 155056.31
2. zgc:112425 zgc:112425 2102.03 15758.72
3. tmsb4x ENSDARG00000077777 1485.88 11139.50 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. mt-co2 ENSDARG00000063908 1249.10 9364.38 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. krt4 ENSDARG00000017624, ENSDARG00000115790 1158.97 8688.69 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
6. hmga1a ENSDARG00000028335 1058.14 7932.77 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
7. mt-nd2 ENSDARG00000063899 846.57 6346.65 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. ppiaa ENSDARG00000009212 817.80 6130.97 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
9. mt-nd4 ENSDARG00000063917 789.28 5917.16 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. mt-atp6 ENSDARG00000063911 784.44 5880.87 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. actb2 ENSDARG00000037870 755.16 5661.36 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
12. si:dkey-151g10.6 si:dkey-151g10.6 718.75 5388.40
13. eef1a1l1 ENSDARG00000020850 702.71 5268.15 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
14. AL954137.2 ENSDARG00000114408 698.64 5237.64
15. pcna ENSDARG00000054155 646.19 4844.42 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
16. ptmab ENSDARG00000101766 641.10 4806.27 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
17. rpl10a ENSDARG00000042905, ENSDARG00000115649 508.70 3813.68 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
18. hsp90ab1 ENSDARG00000029150 504.38 3781.29 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
19. mt-co3 ENSDARG00000063912 495.97 3718.24 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. eef2b ENSDARG00000100371, ENSDARG00000109247 473.82 3552.18 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
21. hspa8 ENSDARG00000068992, ENSDARG00000114726 440.21 3300.21 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
22. rpl23 ENSDARG00000053457 437.92 3283.04 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
23. rps26l ENSDARG00000030408 420.10 3149.45 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
24. rps23 ENSDARG00000021838 369.94 2773.40 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
25. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 369.43 2769.58 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
26. mt-nd1 ENSDARG00000063895 361.29 2708.56 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
27. id1 ENSDARG00000040764 353.90 2653.15 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
28. rpl21 ENSDARG00000010516, ENSDARG00000110263 343.72 2576.84 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
29. fabp3 ENSDARG00000023290 341.94 2563.49 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
30. si:dkeyp-86f7.3 si:dkeyp-86f7.3 329.72 2471.88
31. cirbp cirbp 329.46 2469.93
32. hnrnpab hnrnpab 329.46 2469.93
33. rpl18a ENSDARG00000025073 325.39 2439.42 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
34. rpl36 ENSDARG00000100588 319.02 2391.66 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
35. mt-cyb ENSDARG00000063924 314.95 2361.15 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
36. hmgn2 ENSDARG00000099572 314.18 2355.38 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
37. h3f3a 313.17 2347.81 H3 histone, family 3A, transcript variant X1
38. zgc:123194 zgc:123194 310.37 2326.81
39. ran ENSDARG00000057026 307.31 2303.87 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
40. khdrbs1a ENSDARG00000052856 305.27 2288.58 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
41. rpl8 ENSDARG00000014867 303.49 2275.24 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
42. rpl9 ENSDARG00000037350, ENSDARG00000112384 303.49 2275.24 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
43. rps15 ENSDARG00000070849, ENSDARG00000110979 299.93 2248.55 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
44. rplp1 ENSDARG00000021864 295.09 2212.26 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
45. cfl1 ENSDARG00000021124 284.14 2130.17 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
46. rps27a ENSDARG00000032725, ENSDARG00000114059 283.38 2124.47 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
47. rps14 ENSDARG00000036629 282.10 2114.88 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
48. btf3 ENSDARG00000035400, ENSDARG00000116462 279.81 2097.71 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
49. eif5a ENSDARG00000017235 274.21 2055.73 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
50. actb1 ENSDARG00000037746, ENSDARG00000113649 263.52 1975.58 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
51. rpl26 ENSDARG00000102317 263.52 1975.58 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
52. top1l ENSDARG00000070545 263.26 1973.64 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
53. seta ENSDARG00000031495 258.93 1941.17 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
54. rpl11 ENSDARG00000043509 258.17 1935.48 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
55. rps20 ENSDARG00000036044 254.61 1908.79 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
56. rps2 ENSDARG00000077291 249.77 1872.50 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
57. rpl36a ENSDARG00000058105, ENSDARG00000112656 248.24 1861.03 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
58. rpl19 ENSDARG00000013307 247.99 1859.16 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
59. pabpc1a ENSDARG00000017219 247.22 1853.38 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
60. pbx4 ENSDARG00000052150 244.68 1834.34 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
61. rpl39 ENSDARG00000036316, ENSDARG00000117167 237.55 1780.89 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
62. rps27.1 ENSDARG00000023298 231.18 1733.13 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
63. si:ch1073-429i10.3 230.67 1729.31 si:ch1073-429i10.3, transcript variant X2
64. RPL29 ENSDARG00000077717 229.15 1717.92 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
65. rpl35 ENSDARG00000018334 226.85 1700.67 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
66. ddx5 ENSDARG00000038068 223.04 1672.11 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
67. rpl6 ENSDARG00000058451 220.74 1654.87 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
68. rps15a ENSDARG00000010160 219.73 1647.29 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
69. rpl27 ENSDARG00000015128 213.61 1601.41 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
70. marcksb ENSDARG00000008803 210.31 1576.67 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
71. rps12 ENSDARG00000036875, ENSDARG00000115157 209.03 1567.08 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
72. rps6 ENSDARG00000019778 203.43 1525.10 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
73. faua ENSDARG00000099022 202.92 1521.27 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
74. tuba8l ENSDARG00000042708 202.16 1515.57 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
75. eif5a2 ENSDARG00000056186 197.83 1483.11 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
76. RPL37A RPL37A 195.28 1464.00
77. rps5 ENSDARG00000043453 191.97 1439.18 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
78. hnrnpa0a ENSDARG00000089302 190.19 1425.84 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
79. rps10 ENSDARG00000034897 189.94 1423.96 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
80. h3f3d ENSDARG00000045248 187.39 1404.85 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
81. marcksl1b ENSDARG00000035715 185.10 1387.68 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
82. rpl31 ENSDARG00000053365 184.84 1385.73 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
83. ppiab ENSDARG00000103994 184.08 1380.03 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
84. ccnd1 ENSDARG00000101637 183.06 1372.38 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
85. rpl18 ENSDARG00000029533 179.24 1343.75 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
86. rps4x ENSDARG00000014690 178.22 1336.10 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
87. rpsa ENSDARG00000019181 177.97 1334.22 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
88. pnrc2 ENSDARG00000053291, ENSDARG00000112537 176.44 1322.75 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
89. rplp2l ENSDARG00000011201 173.90 1303.71 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
90. rps9 ENSDARG00000011405, ENSDARG00000113248 173.64 1301.76 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
91. rps19 ENSDARG00000030602 171.10 1282.72 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
92. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 168.55 1263.60 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
93. rplp0 ENSDARG00000051783 164.22 1231.14 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
94. rps29 ENSDARG00000041232 159.13 1192.98 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
95. rpl15 ENSDARG00000009285 158.37 1187.28 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
96. rpl24 ENSDARG00000099104 156.58 1173.87 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
97. rps24 ENSDARG00000039347 156.58 1173.87 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
98. cct6a ENSDARG00000021252 151.49 1135.71 chaperonin containing TCP1, subunit 6A (zeta 1) [Source:ZFIN;Acc:ZDB-GENE-011018-2]
99. fkbp1aa ENSDARG00000022684 151.24 1133.83 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
100. rpl5b ENSDARG00000015862, ENSDARG00000109661 150.98 1131.88 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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