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Experiment Zebrafish_28hpf_whole1, section s1.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 18676.33 140000.69
2. cfl1 ENSDARG00000021124 1778.70 13333.41 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
3. mt-atp6 ENSDARG00000063911 1778.70 13333.41 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
4. rps14 ENSDARG00000036629 1778.70 13333.41 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
5. actb2 ENSDARG00000037870 1334.02 10000.02 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. mt-nd2 ENSDARG00000063899 1334.02 10000.02 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. rcn1 ENSDARG00000070006 1334.02 10000.02 reticulocalbin 1, EF-hand calcium binding domain [Source:ZFIN;Acc:ZDB-GENE-080225-33]
8. rpl9 ENSDARG00000037350, ENSDARG00000112384 1334.02 10000.02 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
9. rps15a ENSDARG00000010160 1334.02 10000.02 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
10. rps4x ENSDARG00000014690 1334.02 10000.02 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
11. zgc:112425 zgc:112425 1334.02 10000.02
12. ARFGAP1 ENSDARG00000101616 889.35 6666.71 ADP-ribosylation factor GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-041114-130]
13. PYURF ENSDARG00000045773 889.35 6666.71 PIGY upstream reading frame [Source:HGNC Symbol;Acc:HGNC:44317]
14. abcf1 ENSDARG00000031795 889.35 6666.71 ATP-binding cassette, sub-family F (GCN20), member 1 [Source:ZFIN;Acc:ZDB-GENE-050517-31]
15. apoa1b ENSDARG00000101324 889.35 6666.71 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
16. atp5a1 889.35 6666.71 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
17. btf3 ENSDARG00000035400, ENSDARG00000116462 889.35 6666.71 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
18. cops7a ENSDARG00000022788, ENSDARG00000112421 889.35 6666.71 COP9 constitutive photomorphogenic homolog subunit 7A [Source:ZFIN;Acc:ZDB-GENE-030131-8680]
19. eef1a1l1 ENSDARG00000020850 889.35 6666.71 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
20. eef2b ENSDARG00000100371, ENSDARG00000109247 889.35 6666.71 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
21. egr2a ENSDARG00000044098 889.35 6666.71 early growth response 2a [Source:ZFIN;Acc:ZDB-GENE-030723-6]
22. gnl3 ENSDARG00000006219 889.35 6666.71 guanine nucleotide binding protein-like 3 (nucleolar) [Source:ZFIN;Acc:ZDB-GENE-030131-616]
23. hmga1a ENSDARG00000028335 889.35 6666.71 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
24. hyi ENSDARG00000030166 889.35 6666.71 hydroxypyruvate isomerase [Source:ZFIN;Acc:ZDB-GENE-040426-1273]
25. id1 ENSDARG00000040764 889.35 6666.71 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
26. kctd5 kctd5 889.35 6666.71
27. kpnb3 ENSDARG00000040245 889.35 6666.71 karyopherin (importin) beta 3 [Source:ZFIN;Acc:ZDB-GENE-030424-2]
28. krt4 ENSDARG00000017624, ENSDARG00000115790 889.35 6666.71 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
29. msna ENSDARG00000058128, ENSDARG00000114614 889.35 6666.71 moesin a [Source:ZFIN;Acc:ZDB-GENE-021211-2]
30. mt-co2 ENSDARG00000063908 889.35 6666.71 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
31. mt-co3 ENSDARG00000063912 889.35 6666.71 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
32. mt-nd1 ENSDARG00000063895 889.35 6666.71 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
33. mt-nd4 ENSDARG00000063917 889.35 6666.71 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
34. pgam5 ENSDARG00000035608 889.35 6666.71 PGAM family member 5, serine/threonine protein phosphatase, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-683]
35. pnrc2 ENSDARG00000053291, ENSDARG00000112537 889.35 6666.71 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
36. rpl10a ENSDARG00000042905, ENSDARG00000115649 889.35 6666.71 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
37. rpl21 ENSDARG00000010516, ENSDARG00000110263 889.35 6666.71 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
38. rpl26 ENSDARG00000102317 889.35 6666.71 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
39. rpl39 ENSDARG00000036316, ENSDARG00000117167 889.35 6666.71 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
40. rpl4 ENSDARG00000041182 889.35 6666.71 ribosomal protein L4 [Source:ZFIN;Acc:ZDB-GENE-030131-9034]
41. rpl8 ENSDARG00000014867 889.35 6666.71 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
42. rps20 ENSDARG00000036044 889.35 6666.71 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
43. rps29 ENSDARG00000041232 889.35 6666.71 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
44. seta ENSDARG00000031495 889.35 6666.71 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
45. sox9b ENSDARG00000043923 889.35 6666.71 SRY (sex determining region Y)-box 9b [Source:ZFIN;Acc:ZDB-GENE-001103-2]
46. tbccd1 ENSDARG00000056886, ENSDARG00000114427 889.35 6666.71 TBCC domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041210-222]
47. umps ENSDARG00000012215 889.35 6666.71 uridine monophosphate synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-785]
48. wnt7bb ENSDARG00000071107 889.35 6666.71 wingless-type MMTV integration site family, member 7Bb [Source:ZFIN;Acc:ZDB-GENE-081006-1]
49. zdhhc6 ENSDARG00000075721 889.35 6666.71 zinc finger, DHHC-type containing 6 [Source:ZFIN;Acc:ZDB-GENE-030131-3189]
50. AL772300.3 AL772300.3 444.67 3333.32
51. AL954137.2 ENSDARG00000114408 444.67 3333.32
52. C5H2orf68 C5H2orf68 444.67 3333.32
53. CABZ01034082.1 ENSDARG00000099583 444.67 3333.32
54. CABZ01111496.1 ENSDARG00000003041 444.67 3333.32 E3 ubiquitin-protein ligase pellino homolog 2-like [Source:NCBI gene;Acc:100334245]
55. CU914813.1 CU914813.1 444.67 3333.32
56. DACT3_1 DACT3_1 444.67 3333.32
57. ENSDARG00000087348 ENSDARG00000087348 444.67 3333.32
58. FUZ ENSDARG00000079730 444.67 3333.32 fuzzy planar cell polarity protein [Source:ZFIN;Acc:ZDB-GENE-090609-2]
59. GANAB_2 GANAB_2 444.67 3333.32
60. GSG2 GSG2 444.67 3333.32
61. METTL18 ENSDARG00000074588 444.67 3333.32 methyltransferase like 18 [Source:HGNC Symbol;Acc:HGNC:28793]
62. PRIMPOL ENSDARG00000033273, ENSDARG00000111555 444.67 3333.32 primase and polymerase (DNA-directed) [Source:ZFIN;Acc:ZDB-GENE-051113-100]
63. SNRPG ENSDARG00000099667 444.67 3333.32 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
64. TUBA1A ENSDARG00000001889 444.67 3333.32 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
65. WU:FC32F04 WU:FC32F04 444.67 3333.32
66. abca3b ENSDARG00000100524 444.67 3333.32 ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
67. acss2 ENSDARG00000037781, ENSDARG00000112371 444.67 3333.32 acyl-CoA synthetase short chain family member 2 [Source:ZFIN;Acc:ZDB-GENE-040718-388]
68. actc1b ENSDARG00000099197 444.67 3333.32 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
69. ammecr1 ENSDARG00000012892 444.67 3333.32 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human) [Source:ZFIN;Acc:ZDB-GENE-040426-1533]
70. apobb apobb 444.67 3333.32
71. arl15b ENSDARG00000057995, ENSDARG00000109775 444.67 3333.32 ADP-ribosylation factor-like 15b [Source:ZFIN;Acc:ZDB-GENE-080813-2]
72. arl6ip1 ENSDARG00000054578, ENSDARG00000112340 444.67 3333.32 ADP-ribosylation factor-like 6 interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1087]
73. atp5g3b 444.67 3333.32 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
74. aup1 ENSDARG00000092609 444.67 3333.32 ancient ubiquitous protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3375]
75. blcap ENSDARG00000052073 444.67 3333.32 bladder cancer associated protein [Source:ZFIN;Acc:ZDB-GENE-000330-7]
76. brd8 ENSDARG00000025071 444.67 3333.32 bromodomain containing 8 [Source:ZFIN;Acc:ZDB-GENE-030722-10]
77. btg2 ENSDARG00000020298 444.67 3333.32 B-cell translocation gene 2 [Source:ZFIN;Acc:ZDB-GENE-000210-15]
78. calm2a ENSDARG00000031427, ENSDARG00000111871 444.67 3333.32 calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
79. ccnd1 ENSDARG00000101637 444.67 3333.32 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
80. ccng1 ENSDARG00000076667, ENSDARG00000110260 444.67 3333.32 cyclin G1 [Source:ZFIN;Acc:ZDB-GENE-020322-1]
81. cct2 ENSDARG00000087206, ENSDARG00000104674 444.67 3333.32 chaperonin containing TCP1, subunit 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-020419-6]
82. cdk2 ENSDARG00000026577 444.67 3333.32 cyclin-dependent kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2741]
83. celf1 ENSDARG00000005315 444.67 3333.32 cugbp, Elav-like family member 1 [Source:ZFIN;Acc:ZDB-GENE-000501-1]
84. ckma ENSDARG00000035327, ENSDARG00000114671 444.67 3333.32 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
85. clic4 ENSDARG00000022995 444.67 3333.32 chloride intracellular channel 4 [Source:ZFIN;Acc:ZDB-GENE-030326-3]
86. cmpk ENSDARG00000019924 444.67 3333.32 cytidylate kinase [Source:ZFIN;Acc:ZDB-GENE-040426-2113]
87. col11a1a ENSDARG00000026165, ENSDARG00000115341 444.67 3333.32 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
88. col18a1 col18a1 444.67 3333.32
89. col1a1a ENSDARG00000012405, ENSDARG00000116113 444.67 3333.32 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
90. cops5 ENSDARG00000057624 444.67 3333.32 COP9 signalosome subunit 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1686]
91. ddx3 ddx3 444.67 3333.32
92. dnaja2 ENSDARG00000104066 444.67 3333.32 DnaJ (Hsp40) homolog, subfamily A, member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2884]
93. dnaja3a ENSDARG00000058494, ENSDARG00000111151 444.67 3333.32 DnaJ (Hsp40) homolog, subfamily A, member 3A [Source:ZFIN;Acc:ZDB-GENE-030131-7837]
94. dnajc2 ENSDARG00000070477 444.67 3333.32 DnaJ (Hsp40) homolog, subfamily C, member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1912]
95. dnmt1 ENSDARG00000030756 444.67 3333.32 DNA (cytosine-5-)-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-990714-15]
96. eif3ha ENSDARG00000102452 444.67 3333.32 eukaryotic translation initiation factor 3, subunit H, a [Source:ZFIN;Acc:ZDB-GENE-040808-19]
97. eif3k ENSDARG00000068289 444.67 3333.32 eukaryotic translation initiation factor 3, subunit K [Source:ZFIN;Acc:ZDB-GENE-050417-45]
98. eif4ebp2 ENSDARG00000031819 444.67 3333.32 eukaryotic translation initiation factor 4E binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-83]
99. fam118b ENSDARG00000078983 444.67 3333.32 family with sequence similarity 118, member B [Source:ZFIN;Acc:ZDB-GENE-060810-6]
100. flncb ENSDARG00000018820 444.67 3333.32 filamin C, gamma b (actin binding protein 280) [Source:ZFIN;Acc:ZDB-GENE-041008-175]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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