Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s9.

Sample reads: 133,423. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 19608.84 146967.62
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2995.18 22448.78 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1596.22 11963.62 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. mt-nd4 ENSDARG00000063917 1435.30 10757.53 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
5. mt-co2 ENSDARG00000063908 1238.04 9279.07 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. tmsb4x ENSDARG00000077777 1166.23 8740.86 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. tpma ENSDARG00000033683 1097.89 8228.65 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
8. mt-co3 ENSDARG00000063912 1084.91 8131.37 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. mt-atp6 ENSDARG00000063911 1060.69 7949.84 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. actb2 ENSDARG00000037870 995.80 7463.49 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. eef1a1l1 ENSDARG00000020850 968.98 7262.47 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
12. mt-nd1 ENSDARG00000063895 912.74 6840.96 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
13. ckmb ENSDARG00000040565 820.17 6147.15 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
14. apoc1l apoc1l 770.86 5777.57
15. apoeb ENSDARG00000040295 729.33 5466.30 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
16. si:dkey-151g10.6 si:dkey-151g10.6 711.16 5330.12
17. apoa2 ENSDARG00000015866 702.51 5265.29 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
18. actc1b ENSDARG00000099197 666.17 4992.92 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
19. apoa1b ENSDARG00000101324 662.71 4966.99 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
20. ckma ENSDARG00000035327, ENSDARG00000114671 632.43 4740.04 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
21. actb1 ENSDARG00000037746, ENSDARG00000113649 628.11 4707.66 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
22. ppiaa ENSDARG00000009212 609.94 4571.48 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
23. eef2b ENSDARG00000100371, ENSDARG00000109247 608.21 4558.51 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
24. zgc:161979 zgc:161979 599.56 4493.68
25. hbbe3 ENSDARG00000038147, ENSDARG00000109344 554.57 4156.48 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
26. apobb apobb 545.05 4085.13
27. zgc:161979_1 zgc:161979_1 531.21 3981.40
28. mt-cyb ENSDARG00000063924 513.90 3851.66 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
29. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 456.80 3423.70 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
30. rpl23 ENSDARG00000053457 447.29 3352.42 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
31. rpl10a ENSDARG00000042905, ENSDARG00000115649 441.23 3307.00 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
32. atp2a1 ENSDARG00000020574 432.58 3242.17 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
33. si:dkey-150i13.2 ENSDARG00000071052 408.36 3060.64 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
34. rpl26 ENSDARG00000102317 404.89 3034.64 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
35. rpl21 ENSDARG00000010516, ENSDARG00000110263 391.92 2937.43 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
36. zgc:112425 zgc:112425 384.13 2879.04
37. eif5a ENSDARG00000017235 368.56 2762.35 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
38. rpl8 ENSDARG00000014867 368.56 2762.35 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
39. zgc:66286 zgc:66286 361.64 2710.48
40. btf3 ENSDARG00000035400, ENSDARG00000116462 360.77 2703.96 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
41. mylz3 ENSDARG00000017441 357.31 2678.03 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
42. hspa8 ENSDARG00000068992, ENSDARG00000114726 356.45 2671.58 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
43. hbae3 ENSDARG00000079305 346.06 2593.71 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
44. hmga1a ENSDARG00000028335 341.74 2561.33 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
45. mt-co1 ENSDARG00000063905 330.49 2477.01 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
46. apoa1a ENSDARG00000012076, ENSDARG00000110395 317.51 2379.73 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
47. rpl18a ENSDARG00000025073 316.65 2373.28 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
48. acta1b ENSDARG00000055618 314.92 2360.32 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
49. tnnc2 ENSDARG00000070835, ENSDARG00000111155 308.86 2314.90 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
50. rpl36a ENSDARG00000058105, ENSDARG00000112656 307.13 2301.93 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
51. acta1a ENSDARG00000036371 306.27 2295.48 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
52. rps27a ENSDARG00000032725, ENSDARG00000114059 303.67 2276.00 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
53. rps14 ENSDARG00000036629 299.35 2243.62 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
54. rpl11 ENSDARG00000043509 290.69 2178.71 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
55. rps23 ENSDARG00000021838 286.37 2146.33 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
56. myhz1.3 ENSDARG00000067997 285.50 2139.81 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
57. rpl9 ENSDARG00000037350, ENSDARG00000112384 284.64 2133.37 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
58. hsp90aa1.1 ENSDARG00000010478 279.45 2094.47 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
59. ctsla ENSDARG00000007836 269.93 2023.12 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
60. rpl27 ENSDARG00000015128 257.82 1932.35 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
61. rplp1 ENSDARG00000021864 254.36 1906.42 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
62. rpl36 ENSDARG00000100588 244.84 1835.07 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
63. rps2 ENSDARG00000077291 244.84 1835.07 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
64. ATP5B 243.11 1822.10 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
65. h1f0 ENSDARG00000038559 241.38 1809.14 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
66. rpl7 ENSDARG00000007320 238.78 1789.65 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
67. rpl19 ENSDARG00000013307 233.59 1750.75 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
68. myl1 ENSDARG00000014196 232.73 1744.30 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
69. myl10 ENSDARG00000062592 232.73 1744.30 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
70. rpl15 ENSDARG00000009285 232.73 1744.30 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
71. rps9 ENSDARG00000011405, ENSDARG00000113248 230.13 1724.82 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
72. rps26l ENSDARG00000030408 229.27 1718.37 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
73. fabp2 ENSDARG00000006427, ENSDARG00000110230 218.89 1640.57 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
74. zgc:153129 zgc:153129 218.89 1640.57
75. rplp0 ENSDARG00000051783 216.29 1621.09 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
76. ttnb ttnb 212.83 1595.15
77. bhmt ENSDARG00000013430 211.10 1582.19 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
78. rpl18 ENSDARG00000029533 211.10 1582.19 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
79. hsp90ab1 ENSDARG00000029150 207.64 1556.26 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
80. fabp3 ENSDARG00000023290 206.77 1549.73 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
81. rps6 ENSDARG00000019778 206.77 1549.73 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
82. rps4x ENSDARG00000014690 204.18 1530.32 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
83. tpm3 ENSDARG00000005162 204.18 1530.32 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
84. rps10 ENSDARG00000034897 202.45 1517.36 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
85. col1a1a ENSDARG00000012405, ENSDARG00000116113 199.85 1497.87 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
86. rpsa ENSDARG00000019181 199.85 1497.87 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
87. faua ENSDARG00000099022 196.39 1471.94 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
88. ttna ttna 196.39 1471.94
89. hbae1_1 194.66 1458.97 hemoglobin, alpha embryonic 1
90. rps27.1 ENSDARG00000023298 192.07 1439.56 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
91. tnni2b.1 ENSDARG00000035958 189.47 1420.07 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
92. RPL29 ENSDARG00000077717 188.60 1413.55 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
93. rps15 ENSDARG00000070849, ENSDARG00000110979 188.60 1413.55 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
94. aldoab ENSDARG00000034470 184.28 1381.17 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
95. apoa4 apoa4 184.28 1381.17
96. atp5g3b 181.68 1361.69 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
97. pabpc1a ENSDARG00000017219 181.68 1361.69 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
98. myhz2 ENSDARG00000012944 180.82 1355.24 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
99. rps5 ENSDARG00000043453 180.82 1355.24 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
100. rps19 ENSDARG00000030602 178.22 1335.75 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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