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Experiment Zebrafish_28hpf_trunk2, section s8.

Sample reads: 133,412. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 28378.55 212714.26
2. krt4 ENSDARG00000017624, ENSDARG00000115790 1990.88 14922.84 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1290.65 9674.20 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. tpma ENSDARG00000033683 1142.01 8560.05 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
5. mt-co2 ENSDARG00000063908 1070.17 8021.57 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. mt-nd4 ENSDARG00000063917 1028.06 7705.93 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
7. tmsb4x ENSDARG00000077777 976.86 7322.15 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
8. mt-co3 ENSDARG00000063912 948.79 7111.75 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. mt-atp6 ENSDARG00000063911 886.03 6641.33 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. actb2 ENSDARG00000037870 843.09 6319.47 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. eef1a1l1 ENSDARG00000020850 818.32 6133.80 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
12. ckma ENSDARG00000035327, ENSDARG00000114671 794.37 5954.28 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
13. ckmb ENSDARG00000040565 783.64 5873.85 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
14. apoc1l apoc1l 744.83 5582.95
15. mt-nd1 ENSDARG00000063895 744.00 5576.73 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
16. hbbe3 ENSDARG00000038147, ENSDARG00000109344 661.43 4957.81 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
17. actc1b ENSDARG00000099197 652.34 4889.68 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
18. apoeb ENSDARG00000040295 616.84 4623.59 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
19. apobb apobb 562.34 4215.08
20. apoa1b ENSDARG00000101324 552.43 4140.79 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
21. ppiaa ENSDARG00000009212 544.17 4078.88 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
22. zgc:161979_1 zgc:161979_1 543.34 4072.66
23. eef2b ENSDARG00000100371, ENSDARG00000109247 529.31 3967.50 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
24. zgc:161979 zgc:161979 521.87 3911.73
25. apoa2 ENSDARG00000015866 497.10 3726.06 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
26. si:dkey-150i13.2 ENSDARG00000071052 493.80 3701.33 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
27. atp2a1 ENSDARG00000020574 485.54 3639.41 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
28. actb1 ENSDARG00000037746, ENSDARG00000113649 456.64 3422.79 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
29. mt-cyb ENSDARG00000063924 436.82 3274.23 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
30. AC024175.17 AC024175.17 435.17 3261.86
31. hbae3 ENSDARG00000079305 433.52 3249.49 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
32. si:dkey-151g10.6 si:dkey-151g10.6 433.52 3249.49
33. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 424.44 3181.43 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
34. rpl10a ENSDARG00000042905, ENSDARG00000115649 415.35 3113.30 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
35. zgc:66286 zgc:66286 401.31 3008.06
36. mylz3 ENSDARG00000017441 385.63 2890.53 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
37. btf3 ENSDARG00000035400, ENSDARG00000116462 378.19 2834.76 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
38. hspa8 ENSDARG00000068992, ENSDARG00000114726 370.76 2779.07 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
39. hmga1a ENSDARG00000028335 350.12 2624.36 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
40. ttnb ttnb 344.34 2581.03
41. rpl23 ENSDARG00000053457 339.38 2543.86 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
42. rpl26 ENSDARG00000102317 334.43 2506.75 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
43. ttna ttna 334.43 2506.75
44. rpl8 ENSDARG00000014867 328.65 2463.43 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
45. zgc:112425 zgc:112425 320.39 2401.52
46. rpl18a ENSDARG00000025073 311.31 2333.46 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
47. hsp90aa1.1 ENSDARG00000010478 303.88 2277.76 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
48. rpl36a ENSDARG00000058105, ENSDARG00000112656 303.88 2277.76 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
49. mt-co1 ENSDARG00000063905 299.75 2246.81 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
50. myl10 ENSDARG00000062592 294.79 2209.63 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
51. rps14 ENSDARG00000036629 294.79 2209.63 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
52. tnnc2 ENSDARG00000070835, ENSDARG00000111155 291.49 2184.89 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
53. acta1a ENSDARG00000036371 289.84 2172.52 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
54. rps27a ENSDARG00000032725, ENSDARG00000114059 285.71 2141.57 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
55. acta1b ENSDARG00000055618 284.88 2135.35 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
56. rplp1 ENSDARG00000021864 281.58 2110.61 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
57. eif5a ENSDARG00000017235 274.97 2061.07 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
58. myhz1.3 ENSDARG00000067997 273.32 2048.70 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
59. rpl11 ENSDARG00000043509 273.32 2048.70 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
60. apoa1a ENSDARG00000012076, ENSDARG00000110395 270.02 2023.96 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
61. rps26l ENSDARG00000030408 269.19 2017.74 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
62. rpl21 ENSDARG00000010516, ENSDARG00000110263 267.54 2005.37 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
63. rps2 ENSDARG00000077291 257.63 1931.09 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
64. rpsa ENSDARG00000019181 244.42 1832.07 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
65. rpl27 ENSDARG00000015128 241.94 1813.49 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
66. rpl19 ENSDARG00000013307 238.64 1788.75 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
67. fetub ENSDARG00000053973 228.73 1714.47 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
68. rpl36 ENSDARG00000100588 226.26 1695.95 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
69. hbae1_1 222.95 1671.14 hemoglobin, alpha embryonic 1
70. tnni2b.1 ENSDARG00000035958 221.30 1658.78 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
71. fabp3 ENSDARG00000023290 220.48 1652.63 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
72. ctsla ENSDARG00000007836 219.65 1646.41 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
73. rpl7 ENSDARG00000007320 219.65 1646.41 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
74. rps23 ENSDARG00000021838 218.82 1640.19 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
75. rpl9 ENSDARG00000037350, ENSDARG00000112384 218.00 1634.04 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
76. zgc:158463 ENSDARG00000089382 218.00 1634.04 zgc:158463 [Source:ZFIN;Acc:ZDB-GENE-070410-9]
77. ATP5B 213.04 1596.86 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
78. rplp0 ENSDARG00000051783 212.22 1590.72 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
79. rps6 ENSDARG00000019778 207.26 1553.54 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
80. tpm3 ENSDARG00000005162 207.26 1553.54 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
81. rps9 ENSDARG00000011405, ENSDARG00000113248 203.13 1522.58 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
82. rpl6 ENSDARG00000058451 202.31 1516.43 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
83. rps15 ENSDARG00000070849, ENSDARG00000110979 201.48 1510.21 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
84. apoa4 apoa4 200.66 1504.07
85. lama2 ENSDARG00000099390 197.35 1479.26 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
86. rpl18 ENSDARG00000029533 190.75 1429.79 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
87. rpl5b ENSDARG00000015862, ENSDARG00000109661 187.45 1405.05 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
88. pabpc1a ENSDARG00000017219 179.19 1343.14 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
89. hbbe1.1 ENSDARG00000113599 178.36 1336.92 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
90. tnnt2c ENSDARG00000032242 178.36 1336.92 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
91. myhz2 ENSDARG00000012944 177.54 1330.77 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
92. h1f0 ENSDARG00000038559 176.71 1324.55 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
93. rps15a ENSDARG00000010160 176.71 1324.55 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
94. aldoab ENSDARG00000034470 174.23 1305.96 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
95. AL935210.1 ENSDARG00000088330 173.41 1299.81 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
96. rpl15 ENSDARG00000009285 173.41 1299.81 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
97. si:dkeyp-86f7.3 si:dkeyp-86f7.3 168.45 1262.63
98. bhmt ENSDARG00000013430 164.32 1231.68 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
99. myl1 ENSDARG00000014196 163.50 1225.53 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
100. cirbp cirbp 162.67 1219.31
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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