Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s5.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 27966.25 209640.62
2. mt-nd2 ENSDARG00000063899 1565.68 11736.65 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 1564.77 11729.83 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. tpma ENSDARG00000033683 1378.23 10331.49 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
5. mt-co2 ENSDARG00000063908 1208.44 9058.71 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. mt-nd4 ENSDARG00000063917 1156.37 8668.38 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
7. mt-co3 ENSDARG00000063912 1025.07 7684.13 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
8. ckmb ENSDARG00000040565 1013.75 7599.27 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
9. mt-atp6 ENSDARG00000063911 918.22 6883.16 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. eef1a1l1 ENSDARG00000020850 914.60 6856.03 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
11. actc1b ENSDARG00000099197 801.40 6007.46 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
12. mt-nd1 ENSDARG00000063895 767.45 5752.96 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
13. ckma ENSDARG00000035327, ENSDARG00000114671 741.64 5559.48 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
14. actb2 ENSDARG00000037870 640.67 4802.59 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
15. hbbe3 ENSDARG00000038147, ENSDARG00000109344 590.87 4429.28 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
16. atp2a1 ENSDARG00000020574 576.83 4324.03 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
17. apoc1l apoc1l 569.58 4269.69
18. si:dkey-151g10.6 si:dkey-151g10.6 552.83 4144.12
19. tmsb4x ENSDARG00000077777 545.14 4086.48 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
20. eef2b ENSDARG00000100371, ENSDARG00000109247 526.57 3947.27 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
21. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 507.10 3801.32 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
22. mt-cyb ENSDARG00000063924 500.31 3750.42 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
23. ppiaa ENSDARG00000009212 494.88 3709.72 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
24. mylz3 ENSDARG00000017441 458.20 3434.76 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
25. rpl10a ENSDARG00000042905, ENSDARG00000115649 434.21 3254.93 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
26. myhz1.3 ENSDARG00000067997 431.49 3234.54 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
27. apoa2 ENSDARG00000015866 422.89 3170.07 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
28. zgc:66286 zgc:66286 422.43 3166.62
29. rpl23 ENSDARG00000053457 419.27 3142.93 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
30. rpl26 ENSDARG00000102317 415.19 3112.35 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
31. si:dkey-150i13.2 ENSDARG00000071052 412.47 3091.96 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
32. zgc:161979 zgc:161979 406.59 3047.88
33. tnnc2 ENSDARG00000070835, ENSDARG00000111155 402.97 3020.74 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
34. apoeb ENSDARG00000040295 391.19 2932.44 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
35. apoa1b ENSDARG00000101324 388.93 2915.50 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
36. hspa8 ENSDARG00000068992, ENSDARG00000114726 385.31 2888.36 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
37. zgc:161979_1 zgc:161979_1 376.70 2823.82
38. mt-co1 ENSDARG00000063905 370.82 2779.74 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
39. zgc:112425 zgc:112425 369.01 2766.17
40. btf3 ENSDARG00000035400, ENSDARG00000116462 367.20 2752.60 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
41. acta1b ENSDARG00000055618 364.93 2735.59 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
42. rpl21 ENSDARG00000010516, ENSDARG00000110263 363.12 2722.02 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
43. myl10 ENSDARG00000062592 359.50 2694.88 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
44. rpl8 ENSDARG00000014867 355.88 2667.75 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
45. ttna ttna 346.82 2599.83
46. actb1 ENSDARG00000037746, ENSDARG00000113649 343.20 2572.70 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
47. rps27a ENSDARG00000032725, ENSDARG00000114059 339.12 2542.11 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
48. apobb apobb 338.22 2535.37
49. hmga1a ENSDARG00000028335 331.88 2487.84 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
50. eif5a ENSDARG00000017235 320.11 2399.61 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
51. rpl18a ENSDARG00000025073 313.77 2352.08 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
52. ttnb ttnb 312.41 2341.89
53. acta1a ENSDARG00000036371 310.15 2324.95 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
54. hbae3 ENSDARG00000079305 306.53 2297.81 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
55. rpl11 ENSDARG00000043509 302.00 2263.85 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
56. rpl36a ENSDARG00000058105, ENSDARG00000112656 297.02 2226.52 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
57. hsp90aa1.1 ENSDARG00000010478 296.11 2219.70 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
58. rps14 ENSDARG00000036629 288.87 2165.43 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
59. rps23 ENSDARG00000021838 276.19 2070.38 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
60. AC024175.17 AC024175.17 273.47 2049.99
61. myl1 ENSDARG00000014196 270.76 2029.67 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
62. rpl9 ENSDARG00000037350, ENSDARG00000112384 263.06 1971.95 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
63. rps26l ENSDARG00000030408 262.15 1965.13 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
64. tpm3 ENSDARG00000005162 254.46 1907.48 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
65. rps2 ENSDARG00000077291 253.55 1900.66 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
66. rplp1 ENSDARG00000021864 249.93 1873.53 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
67. rpl19 ENSDARG00000013307 246.76 1849.76 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
68. myhz2 ENSDARG00000012944 245.40 1839.57 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
69. rpl27 ENSDARG00000015128 244.50 1832.82 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
70. tnni2b.1 ENSDARG00000035958 241.78 1812.43 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
71. rpl36 ENSDARG00000100588 227.74 1707.18 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
72. rpl18 ENSDARG00000029533 220.95 1656.29 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
73. ATP5B 220.50 1652.91 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
74. h1f0 ENSDARG00000038559 218.24 1635.97 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
75. rpl7 ENSDARG00000007320 216.42 1622.33 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
76. rps9 ENSDARG00000011405, ENSDARG00000113248 209.18 1568.06 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
77. rps15 ENSDARG00000070849, ENSDARG00000110979 206.46 1547.67 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
78. rplp0 ENSDARG00000051783 201.48 1510.33 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
79. lama2 ENSDARG00000099390 198.31 1486.57 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
80. rps12 ENSDARG00000036875, ENSDARG00000115157 197.86 1483.20 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
81. tnnt2c ENSDARG00000032242 197.41 1479.82 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
82. rps20 ENSDARG00000036044 195.60 1466.26 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
83. fabp3 ENSDARG00000023290 194.69 1459.44 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
84. rpl15 ENSDARG00000009285 194.69 1459.44 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
85. apoa1a ENSDARG00000012076, ENSDARG00000110395 194.24 1456.06 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
86. smyhc1 ENSDARG00000099959, ENSDARG00000115916 193.33 1449.24 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
87. aldoab ENSDARG00000034470 191.97 1439.05 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
88. RPL29 ENSDARG00000077717 189.26 1418.73 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
89. rps6 ENSDARG00000019778 187.90 1408.54 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
90. rps19 ENSDARG00000030602 187.45 1405.16 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
91. rps27.1 ENSDARG00000023298 186.09 1394.97 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
92. rpl6 ENSDARG00000058451 185.18 1388.15 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
93. rps15a ENSDARG00000010160 182.47 1367.83 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
94. rps4x ENSDARG00000014690 182.01 1364.38 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
95. rpl5b ENSDARG00000015862, ENSDARG00000109661 180.20 1350.82 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
96. rpsa ENSDARG00000019181 179.30 1344.07 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
97. hbbe1.1 ENSDARG00000113599 175.67 1316.86 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
98. hsp90ab1 ENSDARG00000029150 174.77 1310.11 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
99. cirbp cirbp 168.88 1265.96
100. faua ENSDARG00000099022 168.88 1265.96 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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