Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s32.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 27439.44 205688.79
2. mt-nd4 ENSDARG00000063917 2627.18 19693.60 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
3. tpma ENSDARG00000033683 2335.27 17505.42 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2043.36 15317.23 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-co2 ENSDARG00000063908 2043.36 15317.23 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. mt-nd2 ENSDARG00000063899 2043.36 15317.23 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. krt4 ENSDARG00000017624, ENSDARG00000115790 1751.45 13129.04 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
8. si:dkey-151g10.6 si:dkey-151g10.6 1459.54 10940.86
9. eef2b ENSDARG00000100371, ENSDARG00000109247 1167.64 8752.75 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
10. fetub ENSDARG00000053973 1167.64 8752.75 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
11. mt-co3 ENSDARG00000063912 1167.64 8752.75 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
12. AC024175.17 AC024175.17 875.73 6564.56
13. AL954137.2 ENSDARG00000114408 875.73 6564.56
14. actb1 ENSDARG00000037746, ENSDARG00000113649 875.73 6564.56 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
15. hmga1a ENSDARG00000028335 875.73 6564.56 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
16. mt-atp6 ENSDARG00000063911 875.73 6564.56 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
17. mt-co1 ENSDARG00000063905 875.73 6564.56 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
18. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 875.73 6564.56 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
19. rpl8 ENSDARG00000014867 875.73 6564.56 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
20. rplp2l ENSDARG00000011201 875.73 6564.56 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
21. rps27a ENSDARG00000032725, ENSDARG00000114059 875.73 6564.56 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
22. rpsa ENSDARG00000019181 875.73 6564.56 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
23. tmsb4x ENSDARG00000077777 875.73 6564.56 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
24. tnnc2 ENSDARG00000070835, ENSDARG00000111155 875.73 6564.56 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
25. RPS17L RPS17L 583.82 4376.37
26. acta1b ENSDARG00000055618 583.82 4376.37 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
27. actb2 ENSDARG00000037870 583.82 4376.37 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
28. apoa1b ENSDARG00000101324 583.82 4376.37 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
29. apobb apobb 583.82 4376.37
30. col1a1a ENSDARG00000012405, ENSDARG00000116113 583.82 4376.37 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
31. cycsb ENSDARG00000044562 583.82 4376.37 cytochrome c, somatic b [Source:ZFIN;Acc:ZDB-GENE-040625-38]
32. desma ENSDARG00000058656 583.82 4376.37 desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]
33. fabp7a ENSDARG00000007697 583.82 4376.37 fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
34. hsp90ab1 ENSDARG00000029150 583.82 4376.37 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
35. klhl40b ENSDARG00000019125 583.82 4376.37 kelch-like family member 40b [Source:ZFIN;Acc:ZDB-GENE-060227-1]
36. larsb ENSDARG00000019280 583.82 4376.37 leucyl-tRNA synthetase b [Source:ZFIN;Acc:ZDB-GENE-030114-7]
37. ldhba ENSDARG00000019644 583.82 4376.37 lactate dehydrogenase Ba [Source:ZFIN;Acc:ZDB-GENE-991026-6]
38. mt-cyb ENSDARG00000063924 583.82 4376.37 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
39. mt-nd1 ENSDARG00000063895 583.82 4376.37 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
40. mylz3 ENSDARG00000017441 583.82 4376.37 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
41. polr2eb ENSDARG00000026183 583.82 4376.37 polymerase (RNA) II (DNA directed) polypeptide E, b [Source:ZFIN;Acc:ZDB-GENE-040801-83]
42. ppiaa ENSDARG00000009212 583.82 4376.37 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
43. ppp1caa ENSDARG00000003486, ENSDARG00000115977 583.82 4376.37 protein phosphatase 1, catalytic subunit, alpha isozyme a [Source:ZFIN;Acc:ZDB-GENE-040516-3]
44. pvalb2 ENSDARG00000002768, ENSDARG00000114085 583.82 4376.37 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
45. qkia ENSDARG00000097478 583.82 4376.37 QKI, KH domain containing, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-990415-230]
46. rpl15 ENSDARG00000009285 583.82 4376.37 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
47. rpl18a ENSDARG00000025073 583.82 4376.37 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
48. rpl19 ENSDARG00000013307 583.82 4376.37 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
49. rpl24 ENSDARG00000099104 583.82 4376.37 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
50. rpl26 ENSDARG00000102317 583.82 4376.37 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
51. rps2 ENSDARG00000077291 583.82 4376.37 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
52. rps29 ENSDARG00000041232 583.82 4376.37 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
53. rps6 ENSDARG00000019778 583.82 4376.37 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
54. slc25a33 ENSDARG00000039931 583.82 4376.37 solute carrier family 25 (pyrimidine nucleotide carrier), member 33 [Source:ZFIN;Acc:ZDB-GENE-040426-2183]
55. trmt11 ENSDARG00000040033 583.82 4376.37 tRNA methyltransferase 11 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-953]
56. vdac3 ENSDARG00000003695 583.82 4376.37 voltage-dependent anion channel 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2380]
57. zgc:112425 zgc:112425 583.82 4376.37
58. zgc:161979 zgc:161979 583.82 4376.37
59. ATP5B 291.91 2188.19 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
60. BX324201.1 BX324201.1 291.91 2188.19
61. BX511252.1 BX511252.1 291.91 2188.19
62. CABZ01074130.1 ENSDARG00000105274 291.91 2188.19
63. CABZ01112358.1 CABZ01112358.1 291.91 2188.19
64. DDX24 ENSDARG00000104708 291.91 2188.19 DEAD (Asp-Glu-Ala-Asp) box helicase 24 [Source:ZFIN;Acc:ZDB-GENE-100716-4]
65. EIF1B ENSDARG00000029445 291.91 2188.19 eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
66. EIF4G1 EIF4G1 291.91 2188.19
67. IDH2 ENSDARG00000003795 291.91 2188.19 isocitrate dehydrogenase 2 (NADP+), mitochondrial [Source:ZFIN;Acc:ZDB-GENE-031118-95]
68. MRPL47 ENSDARG00000075743, ENSDARG00000114962 291.91 2188.19 mitochondrial ribosomal protein L47 [Source:ZFIN;Acc:ZDB-GENE-030219-177]
69. NPR2 ENSDARG00000104393 291.91 2188.19 natriuretic peptide receptor 2 [Source:ZFIN;Acc:ZDB-GENE-141030-2]
70. NRD1 NRD1 291.91 2188.19
71. PWWP2A ENSDARG00000075526 291.91 2188.19 PWWP domain containing 2A [Source:ZFIN;Acc:ZDB-GENE-131120-4]
72. RPL29 ENSDARG00000077717 291.91 2188.19 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
73. RPL37A RPL37A 291.91 2188.19
74. SMAD4 SMAD4 291.91 2188.19
75. TMEM106C ENSDARG00000098105 291.91 2188.19 transmembrane protein 106C [Source:ZFIN;Acc:ZDB-GENE-061013-562]
76. TUBA1A ENSDARG00000001889 291.91 2188.19 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
77. acta1a ENSDARG00000036371 291.91 2188.19 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
78. actc1b ENSDARG00000099197 291.91 2188.19 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
79. ak2 ENSDARG00000005926 291.91 2188.19 adenylate kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-512]
80. aldh9a1a.1 ENSDARG00000069100, ENSDARG00000114905 291.91 2188.19 aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1257]
81. aldh9a1b ENSDARG00000037061 291.91 2188.19 aldehyde dehydrogenase 9 family, member A1b [Source:ZFIN;Acc:ZDB-GENE-040120-5]
82. ap1g1 ENSDARG00000102394 291.91 2188.19 adaptor related protein complex 1 subunit gamma 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3187]
83. apbb1 ENSDARG00000076560 291.91 2188.19 amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) [Source:ZFIN;Acc:ZDB-GENE-091118-127]
84. apg3l apg3l 291.91 2188.19
85. apoa2 ENSDARG00000015866 291.91 2188.19 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
86. apoc1l apoc1l 291.91 2188.19
87. apoc2 ENSDARG00000092155 291.91 2188.19 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
88. arrb2b ENSDARG00000011545 291.91 2188.19 arrestin, beta 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1332]
89. atp2a1 ENSDARG00000020574 291.91 2188.19 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
90. atp5a1 291.91 2188.19 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
91. atp5c1 291.91 2188.19 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant 3
92. atp5o 291.91 2188.19 ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
93. aurkb ENSDARG00000037640 291.91 2188.19 aurora kinase B [Source:ZFIN;Acc:ZDB-GENE-020419-40]
94. btg1 ENSDARG00000027249 291.91 2188.19 B-cell translocation gene 1, anti-proliferative [Source:ZFIN;Acc:ZDB-GENE-010726-1]
95. ca2 ENSDARG00000014488 291.91 2188.19 carbonic anhydrase II [Source:ZFIN;Acc:ZDB-GENE-031219-5]
96. calm1b ENSDARG00000034187 291.91 2188.19 calmodulin 1b [Source:ZFIN;Acc:ZDB-GENE-030804-2]
97. casc5 291.91 2188.19 cancer susceptibility candidate 5, transcript variant X3
98. cav3 ENSDARG00000024141 291.91 2188.19 caveolin 3 [Source:ZFIN;Acc:ZDB-GENE-050522-426]
99. ccdc80 ENSDARG00000000002 291.91 2188.19 coiled-coil domain containing 80 [Source:ZFIN;Acc:ZDB-GENE-030616-56]
100. cdk1 ENSDARG00000087554, ENSDARG00000110840 291.91 2188.19 cyclin-dependent kinase 1 [Source:ZFIN;Acc:ZDB-GENE-010320-1]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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