Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s31.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 19574.19 146731.17
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2765.92 20733.77 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-co2 ENSDARG00000063908 1702.10 12759.21 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
4. apoc1l apoc1l 1276.58 9569.44
5. eef1a1l1 ENSDARG00000020850 1276.58 9569.44 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
6. tmsb4x ENSDARG00000077777 1276.58 9569.44 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. apoeb ENSDARG00000040295 1063.81 7974.48 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
8. mt-atp6 ENSDARG00000063911 1063.81 7974.48 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
9. mt-nd2 ENSDARG00000063899 1063.81 7974.48 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
10. rpl10a ENSDARG00000042905, ENSDARG00000115649 1063.81 7974.48 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
11. zgc:153129 zgc:153129 1063.81 7974.48
12. BX511252.1 BX511252.1 851.05 6379.60
13. actc1b ENSDARG00000099197 851.05 6379.60 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
14. bhmt ENSDARG00000013430 851.05 6379.60 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
15. etfb ENSDARG00000009250 851.05 6379.60 electron transfer flavoprotein subunit beta [Source:ZFIN;Acc:ZDB-GENE-040426-1931]
16. mt-co1 ENSDARG00000063905 851.05 6379.60 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
17. mt-nd4 ENSDARG00000063917 851.05 6379.60 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
18. myhz1.3 ENSDARG00000067997 851.05 6379.60 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
19. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 851.05 6379.60 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
20. rpl18a ENSDARG00000025073 851.05 6379.60 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
21. aldh3a2b ENSDARG00000029381 638.29 4784.72 aldehyde dehydrogenase 3 family, member A2b [Source:ZFIN;Acc:ZDB-GENE-040912-103]
22. atp1b1a ENSDARG00000013144 638.29 4784.72 ATPase Na+/K+ transporting subunit beta 1a [Source:ZFIN;Acc:ZDB-GENE-001127-3]
23. atp5c1 638.29 4784.72 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant 3
24. eef2b ENSDARG00000100371, ENSDARG00000109247 638.29 4784.72 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
25. efemp2a ENSDARG00000094324 638.29 4784.72 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
26. fabp2 ENSDARG00000006427, ENSDARG00000110230 638.29 4784.72 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
27. gatm ENSDARG00000036239 638.29 4784.72 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
28. hmga1a ENSDARG00000028335 638.29 4784.72 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
29. hspa8 ENSDARG00000068992, ENSDARG00000114726 638.29 4784.72 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
30. ldhba ENSDARG00000019644 638.29 4784.72 lactate dehydrogenase Ba [Source:ZFIN;Acc:ZDB-GENE-991026-6]
31. mt-co3 ENSDARG00000063912 638.29 4784.72 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
32. mt-cyb ENSDARG00000063924 638.29 4784.72 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
33. mt-nd1 ENSDARG00000063895 638.29 4784.72 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
34. paics ENSDARG00000033539 638.29 4784.72 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
35. ppiaa ENSDARG00000009212 638.29 4784.72 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
36. rpl35 ENSDARG00000018334 638.29 4784.72 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
37. rpl9 ENSDARG00000037350, ENSDARG00000112384 638.29 4784.72 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
38. si:dkey-150i13.2 ENSDARG00000071052 638.29 4784.72 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
39. ttnb ttnb 638.29 4784.72
40. zgc:123194 zgc:123194 638.29 4784.72
41. zgc:66286 zgc:66286 638.29 4784.72
42. CABZ01111496.1 ENSDARG00000003041 425.53 3189.84 E3 ubiquitin-protein ligase pellino homolog 2-like [Source:NCBI gene;Acc:100334245]
43. NCOA7_1 NCOA7_1 425.53 3189.84
44. RPL29 ENSDARG00000077717 425.53 3189.84 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
45. RPL37A RPL37A 425.53 3189.84
46. UBC ENSDARG00000102632 425.53 3189.84 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
47. actb1 ENSDARG00000037746, ENSDARG00000113649 425.53 3189.84 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
48. ahsa1l ahsa1l 425.53 3189.84
49. anxa1c ENSDARG00000104359 425.53 3189.84 annexin A1c [Source:ZFIN;Acc:ZDB-GENE-030131-5274]
50. atp2a1 ENSDARG00000020574 425.53 3189.84 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
51. cnksr2b ENSDARG00000073707 425.53 3189.84 connector enhancer of kinase suppressor of Ras 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8048]
52. ddt ENSDARG00000044751, ENSDARG00000109625 425.53 3189.84 D-dopachrome tautomerase [Source:ZFIN;Acc:ZDB-GENE-040625-160]
53. eif4a1b ENSDARG00000003032, ENSDARG00000116907 425.53 3189.84 eukaryotic translation initiation factor 4A1B [Source:ZFIN;Acc:ZDB-GENE-040120-6]
54. foxo3a ENSDARG00000023058 425.53 3189.84 forkhead box O3A [Source:ZFIN;Acc:ZDB-GENE-050116-1]
55. gpd1c ENSDARG00000036942 425.53 3189.84 glycerol-3-phosphate dehydrogenase 1c [Source:ZFIN;Acc:ZDB-GENE-040426-2576]
56. gpx4a ENSDARG00000068478 425.53 3189.84 glutathione peroxidase 4a [Source:ZFIN;Acc:ZDB-GENE-030410-2]
57. id1 ENSDARG00000040764 425.53 3189.84 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
58. mibp2 ENSDARG00000101844 425.53 3189.84 muscle-specific beta 1 integrin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-031113-14]
59. mid1ip1l ENSDARG00000018145 425.53 3189.84 MID1 interacting protein 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-1697]
60. myl10 ENSDARG00000062592 425.53 3189.84 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
61. mylz3 ENSDARG00000017441 425.53 3189.84 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
62. nt5c3a ENSDARG00000058597 425.53 3189.84 5'-nucleotidase, cytosolic IIIA [Source:ZFIN;Acc:ZDB-GENE-030131-439]
63. ppm1da ENSDARG00000009273 425.53 3189.84 protein phosphatase, Mg2+/Mn2+ dependent, 1Da [Source:ZFIN;Acc:ZDB-GENE-040426-815]
64. ran ENSDARG00000057026 425.53 3189.84 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
65. rpia ENSDARG00000056640, ENSDARG00000110576 425.53 3189.84 ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) [Source:ZFIN;Acc:ZDB-GENE-041114-24]
66. rpl15 ENSDARG00000009285 425.53 3189.84 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
67. rpl21 ENSDARG00000010516, ENSDARG00000110263 425.53 3189.84 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
68. rpl24 ENSDARG00000099104 425.53 3189.84 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
69. rpl36 ENSDARG00000100588 425.53 3189.84 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
70. rpl5b ENSDARG00000015862, ENSDARG00000109661 425.53 3189.84 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
71. rplp2l ENSDARG00000011201 425.53 3189.84 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
72. rps10 ENSDARG00000034897 425.53 3189.84 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
73. rps15 ENSDARG00000070849, ENSDARG00000110979 425.53 3189.84 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
74. rps23 ENSDARG00000021838 425.53 3189.84 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
75. rps25 ENSDARG00000041811 425.53 3189.84 ribosomal protein S25 [Source:ZFIN;Acc:ZDB-GENE-040426-1788]
76. rps27.2 ENSDARG00000055475 425.53 3189.84 ribosomal protein S27, isoform 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1735]
77. si:dkey-126g1.9 ENSDARG00000093702 425.53 3189.84 si:dkey-126g1.9 [Source:ZFIN;Acc:ZDB-GENE-030131-9862]
78. si:dkey-151g10.6 si:dkey-151g10.6 425.53 3189.84
79. slc25a20 ENSDARG00000040401 425.53 3189.84 solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 [Source:ZFIN;Acc:ZDB-GENE-040426-1869]
80. smox ENSDARG00000036967 425.53 3189.84 spermine oxidase [Source:ZFIN;Acc:ZDB-GENE-031201-3]
81. tnnc2 ENSDARG00000070835, ENSDARG00000111155 425.53 3189.84 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
82. ttna ttna 425.53 3189.84
83. tuba8l ENSDARG00000042708 425.53 3189.84 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
84. zgc:112425 zgc:112425 425.53 3189.84
85. zgc:161979 zgc:161979 425.53 3189.84
86. zgc:193541 ENSDARG00000092873 425.53 3189.84 zgc:193541 [Source:ZFIN;Acc:ZDB-GENE-081022-15]
87. zgc:77849 ENSDARG00000012458, ENSDARG00000116615 425.53 3189.84 zgc:77849 [Source:ZFIN;Acc:ZDB-GENE-030131-1107]
88. ACTN4_1 ACTN4_1 212.76 1594.88
89. AL935210.1 ENSDARG00000088330 212.76 1594.88 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
90. ARID3C ENSDARG00000067729, ENSDARG00000114447 212.76 1594.88 AT rich interactive domain 3C (BRIGHT-like) [Source:ZFIN;Acc:ZDB-GENE-060526-12]
91. CABZ01079490.1 CABZ01079490.1 212.76 1594.88
92. CAPN1_1 ENSDARG00000055338 212.76 1594.88 calpain 1 [Source:HGNC Symbol;Acc:HGNC:1476]
93. CPEB4 CPEB4 212.76 1594.88
94. CU915738.1 CU915738.1 212.76 1594.88
95. FBXO34 ENSDARG00000071259 212.76 1594.88 F-box protein 34 [Source:ZFIN;Acc:ZDB-GENE-030131-2194]
96. FP067396.1 FP067396.1 212.76 1594.88
97. FP326665.1 FP326665.1 212.76 1594.88
98. HNRNPA2B1 HNRNPA2B1 212.76 1594.88
99. LGALS3 LGALS3 212.76 1594.88
100. MAL 212.76 1594.88 mal, T-cell differentiation protein
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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