Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s26.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 25098.90 188144.56
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3782.03 28350.58 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-co2 ENSDARG00000063908 2406.74 18041.23 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
4. mt-atp6 ENSDARG00000063911 1375.28 10309.27 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
5. mt-cyb ENSDARG00000063924 1375.28 10309.27 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
6. tpma ENSDARG00000033683 1375.28 10309.27 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
7. acta1b ENSDARG00000055618 1031.46 7731.96 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
8. actb2 ENSDARG00000037870 1031.46 7731.96 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. actc1b ENSDARG00000099197 1031.46 7731.96 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. mt-co3 ENSDARG00000063912 1031.46 7731.96 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
11. mt-nd1 ENSDARG00000063895 1031.46 7731.96 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
12. mt-nd2 ENSDARG00000063899 1031.46 7731.96 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. rpl21 ENSDARG00000010516, ENSDARG00000110263 1031.46 7731.96 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
14. tmsb4x ENSDARG00000077777 1031.46 7731.96 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
15. BX511252.1 BX511252.1 687.64 5154.64
16. EIF4G1 EIF4G1 687.64 5154.64
17. actb1 ENSDARG00000037746, ENSDARG00000113649 687.64 5154.64 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
18. atp5g3b 687.64 5154.64 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
19. atp6v1g1 ENSDARG00000022315, ENSDARG00000110951 687.64 5154.64 ATPase H+ transporting V1 subunit G1 [Source:ZFIN;Acc:ZDB-GENE-030131-6965]
20. frem1a ENSDARG00000069473 687.64 5154.64 Fras1 related extracellular matrix 1a [Source:ZFIN;Acc:ZDB-GENE-081119-1]
21. gamt ENSDARG00000070844, ENSDARG00000109945 687.64 5154.64 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
22. gpc4 ENSDARG00000015472 687.64 5154.64 glypican 4 [Source:ZFIN;Acc:ZDB-GENE-011119-1]
23. hspa8 ENSDARG00000068992, ENSDARG00000114726 687.64 5154.64 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
24. mt-co1 ENSDARG00000063905 687.64 5154.64 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
25. myl1 ENSDARG00000014196 687.64 5154.64 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
26. pfn2l ENSDARG00000012682 687.64 5154.64 profilin 2 like [Source:ZFIN;Acc:ZDB-GENE-030131-34]
27. ppiaa ENSDARG00000009212 687.64 5154.64 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
28. rbp4 ENSDARG00000101199 687.64 5154.64 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
29. rpl22 ENSDARG00000070437 687.64 5154.64 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
30. rpl27 ENSDARG00000015128 687.64 5154.64 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
31. rpl35 ENSDARG00000018334 687.64 5154.64 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
32. rpl5a ENSDARG00000020197 687.64 5154.64 ribosomal protein L5a [Source:ZFIN;Acc:ZDB-GENE-030131-5161]
33. rplp2 ENSDARG00000101406 687.64 5154.64 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
34. rps14 ENSDARG00000036629 687.64 5154.64 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
35. rps15a ENSDARG00000010160 687.64 5154.64 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
36. rps24 ENSDARG00000039347 687.64 5154.64 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
37. rps27a ENSDARG00000032725, ENSDARG00000114059 687.64 5154.64 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
38. rps29 ENSDARG00000041232 687.64 5154.64 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
39. skp1 ENSDARG00000003151 687.64 5154.64 S-phase kinase-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1707]
40. srsf2a ENSDARG00000057484 687.64 5154.64 serine/arginine-rich splicing factor 2a [Source:ZFIN;Acc:ZDB-GENE-040426-2706]
41. tnni2b.1 ENSDARG00000035958 687.64 5154.64 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
42. ttna ttna 687.64 5154.64
43. zgc:153129 zgc:153129 687.64 5154.64
44. ACTN4_1 ACTN4_1 343.82 2577.32
45. ACVR1B ACVR1B 343.82 2577.32
46. AL954137.2 ENSDARG00000114408 343.82 2577.32
47. C18H11orf58 C18H11orf58 343.82 2577.32
48. C1H7orf55 C1H7orf55 343.82 2577.32
49. C1QBP ENSDARG00000039887 343.82 2577.32 complement component 1, q subcomponent binding protein [Source:ZFIN;Acc:ZDB-GENE-050417-408]
50. C4H12orf45 C4H12orf45 343.82 2577.32
51. CABZ01111496.1 ENSDARG00000003041 343.82 2577.32 E3 ubiquitin-protein ligase pellino homolog 2-like [Source:NCBI gene;Acc:100334245]
52. CR352249.1 ENSDARG00000114701 343.82 2577.32 solute carrier family 38, member 8b [Source:NCBI gene;Acc:795255]
53. CR847934.1 CR847934.1 343.82 2577.32
54. CU019646.2 CU019646.2 343.82 2577.32
55. ENSDARG00000092971 ENSDARG00000092971 343.82 2577.32
56. FP245444.1 FP245444.1 343.82 2577.32
57. KDM6B KDM6B 343.82 2577.32
58. PEAK1 ENSDARG00000079756 343.82 2577.32 pseudopodium-enriched atypical kinase 1 [Source:ZFIN;Acc:ZDB-GENE-100422-1]
59. PLEKHG1 343.82 2577.32 pleckstrin homology and RhoGEF domain containing G1, transcript variant X2
60. PRODH_1 PRODH_1 343.82 2577.32
61. ROMO1 ENSDARG00000038076 343.82 2577.32 reactive oxygen species modulator 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1768]
62. SCARF2 343.82 2577.32 scavenger receptor class F, member 2
63. TSPY2 TSPY2 343.82 2577.32
64. UBC ENSDARG00000102632 343.82 2577.32 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
65. WDR1 ENSDARG00000114022 343.82 2577.32 WD repeat domain 1 [Source:HGNC Symbol;Acc:HGNC:12754]
66. WDR83OS ENSDARG00000025554 343.82 2577.32 WD repeat domain 83 opposite strand [Source:ZFIN;Acc:ZDB-GENE-040426-1674]
67. ZDHHC5 ZDHHC5 343.82 2577.32
68. acsl3b ENSDARG00000014674 343.82 2577.32 acyl-CoA synthetase long chain family member 3b [Source:ZFIN;Acc:ZDB-GENE-030131-492]
69. agla ENSDARG00000103811 343.82 2577.32 amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase a [Source:ZFIN;Acc:ZDB-GENE-071004-6]
70. akap7 ENSDARG00000043843 343.82 2577.32 A kinase (PRKA) anchor protein 7 [Source:ZFIN;Acc:ZDB-GENE-040724-128]
71. akr1b1 ENSDARG00000006215 343.82 2577.32 aldo-keto reductase family 1, member B1 (aldose reductase) [Source:ZFIN;Acc:ZDB-GENE-040625-7]
72. aldoab ENSDARG00000034470 343.82 2577.32 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
73. and1 ENSDARG00000088514 343.82 2577.32 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
74. and3 ENSDARG00000056873 343.82 2577.32 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
75. anxa11b ENSDARG00000002632 343.82 2577.32 annexin A11b [Source:ZFIN;Acc:ZDB-GENE-030707-5]
76. apoa4 apoa4 343.82 2577.32
77. arf1l arf1l 343.82 2577.32
78. arfgef2 ENSDARG00000074702 343.82 2577.32 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) [Source:ZFIN;Acc:ZDB-GENE-090312-50]
79. arhgap1 ENSDARG00000024324 343.82 2577.32 Rho GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-050417-305]
80. atp2a1 ENSDARG00000020574 343.82 2577.32 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
81. atp5a1 343.82 2577.32 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
82. atp5g1 343.82 2577.32 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
83. atraid ENSDARG00000043388 343.82 2577.32 all-trans retinoic acid-induced differentiation factor [Source:ZFIN;Acc:ZDB-GENE-040724-177]
84. bcam ENSDARG00000090190 343.82 2577.32 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
85. calm2a ENSDARG00000031427, ENSDARG00000111871 343.82 2577.32 calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
86. calr ENSDARG00000076290 343.82 2577.32 calreticulin [Source:ZFIN;Acc:ZDB-GENE-030131-4042]
87. camk2g1 ENSDARG00000071395 343.82 2577.32 calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 1 [Source:ZFIN;Acc:ZDB-GENE-050913-146]
88. capns1b ENSDARG00000013804 343.82 2577.32 calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
89. cav3 ENSDARG00000024141 343.82 2577.32 caveolin 3 [Source:ZFIN;Acc:ZDB-GENE-050522-426]
90. ccne2 ENSDARG00000098529 343.82 2577.32 cyclin E2 [Source:ZFIN;Acc:ZDB-GENE-030131-9689]
91. cdk16_1 ENSDARG00000032072 343.82 2577.32 cyclin-dependent kinase 16 [Source:ZFIN;Acc:ZDB-GENE-030131-2939]
92. cfl1l ENSDARG00000012972 343.82 2577.32 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
93. ckma ENSDARG00000035327, ENSDARG00000114671 343.82 2577.32 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
94. clta ENSDARG00000045618, ENSDARG00000115484 343.82 2577.32 clathrin, light chain A [Source:ZFIN;Acc:ZDB-GENE-040426-1986]
95. col11a1a ENSDARG00000026165, ENSDARG00000115341 343.82 2577.32 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
96. col1a1a ENSDARG00000012405, ENSDARG00000116113 343.82 2577.32 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
97. col1a1b ENSDARG00000035809 343.82 2577.32 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
98. col2a1a ENSDARG00000069093, ENSDARG00000111202 343.82 2577.32 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
99. coq9 ENSDARG00000023583, ENSDARG00000110255, ENSDARG00000111424 343.82 2577.32 coenzyme Q9 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-061207-37]
100. cox4i1 ENSDARG00000032970 343.82 2577.32 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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