Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s22.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 18896.16 141649.63
2. krt4 ENSDARG00000017624, ENSDARG00000115790 13249.90 99324.07 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-co2 ENSDARG00000063908 1882.09 14108.55 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
4. tmsb4x ENSDARG00000077777 1806.80 13544.16 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. actb2 ENSDARG00000037870 1580.95 11851.14 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. mt-atp6 ENSDARG00000063911 1279.82 9593.80 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
7. mt-nd2 ENSDARG00000063899 1279.82 9593.80 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. apoa2 ENSDARG00000015866 1053.97 7900.78 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
9. mt-nd4 ENSDARG00000063917 1053.97 7900.78 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. actb1 ENSDARG00000037746, ENSDARG00000113649 828.12 6207.76 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
11. apoa1b ENSDARG00000101324 828.12 6207.76 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
12. apoc1l apoc1l 828.12 6207.76
13. apoa1a ENSDARG00000012076, ENSDARG00000110395 752.84 5643.45 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
14. rbp4 ENSDARG00000101199 677.55 5079.06 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
15. si:dkey-151g10.6 si:dkey-151g10.6 677.55 5079.06
16. apobb apobb 602.27 4514.74
17. cyt1l ENSDARG00000036832 602.27 4514.74 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
18. mt-co3 ENSDARG00000063912 602.27 4514.74 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. rpl36a ENSDARG00000058105, ENSDARG00000112656 602.27 4514.74 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
20. rpl9 ENSDARG00000037350, ENSDARG00000112384 602.27 4514.74 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
21. zgc:92533 zgc:92533 602.27 4514.74
22. hmga1a ENSDARG00000028335 526.98 3950.35 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
23. mt-cyb ENSDARG00000063924 526.98 3950.35 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
24. apoeb ENSDARG00000040295 451.70 3386.04 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
25. eef1a1l1 ENSDARG00000020850 451.70 3386.04 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
26. eef2b ENSDARG00000100371, ENSDARG00000109247 451.70 3386.04 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
27. mt-nd1 ENSDARG00000063895 451.70 3386.04 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
28. rpl35 ENSDARG00000018334 451.70 3386.04 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
29. rps14 ENSDARG00000036629 451.70 3386.04 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
30. rps4x ENSDARG00000014690 451.70 3386.04 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
31. tpma ENSDARG00000033683 451.70 3386.04 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
32. BX511252.1 BX511252.1 376.42 2821.72
33. ppiaa ENSDARG00000009212 376.42 2821.72 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
34. rpl26 ENSDARG00000102317 376.42 2821.72 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
35. rpl39 ENSDARG00000036316, ENSDARG00000117167 376.42 2821.72 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
36. rpl7 ENSDARG00000007320 376.42 2821.72 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
37. rps20 ENSDARG00000036044 376.42 2821.72 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
38. rps27a ENSDARG00000032725, ENSDARG00000114059 376.42 2821.72 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
39. rps5 ENSDARG00000043453 376.42 2821.72 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
40. si:dkey-150i13.2 ENSDARG00000071052 376.42 2821.72 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
41. spna2 376.42 2821.72 spectrin alpha 2, transcript variant X12
42. tnnc2 ENSDARG00000070835, ENSDARG00000111155 376.42 2821.72 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
43. zgc:112425 zgc:112425 376.42 2821.72
44. APOB APOB 301.13 2257.33
45. atp6v1d ENSDARG00000011175 301.13 2257.33 ATPase H+ transporting V1 subunit D [Source:ZFIN;Acc:ZDB-GENE-040426-727]
46. atp6v1g1 ENSDARG00000022315, ENSDARG00000110951 301.13 2257.33 ATPase H+ transporting V1 subunit G1 [Source:ZFIN;Acc:ZDB-GENE-030131-6965]
47. bhmt ENSDARG00000013430 301.13 2257.33 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
48. ckmb ENSDARG00000040565 301.13 2257.33 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
49. eif1b ENSDARG00000012688 301.13 2257.33 eukaryotic translation initiation factor 1B [Source:ZFIN;Acc:ZDB-GENE-030131-956]
50. fam222ba ENSDARG00000059886 301.13 2257.33 family with sequence similarity 222, member Ba [Source:ZFIN;Acc:ZDB-GENE-060526-355]
51. histh1l ENSDARG00000035519 301.13 2257.33 histone H1 like [Source:ZFIN;Acc:ZDB-GENE-050417-145]
52. kctd5 kctd5 301.13 2257.33
53. mt-co1 ENSDARG00000063905 301.13 2257.33 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
54. ptmab ENSDARG00000101766 301.13 2257.33 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
55. rpl10a ENSDARG00000042905, ENSDARG00000115649 301.13 2257.33 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
56. rpl18a ENSDARG00000025073 301.13 2257.33 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
57. rpl21 ENSDARG00000010516, ENSDARG00000110263 301.13 2257.33 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
58. rpl23 ENSDARG00000053457 301.13 2257.33 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
59. rpl6 ENSDARG00000058451 301.13 2257.33 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
60. rpl8 ENSDARG00000014867 301.13 2257.33 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
61. rplp1 ENSDARG00000021864 301.13 2257.33 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
62. rps13 ENSDARG00000036298, ENSDARG00000112818 301.13 2257.33 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
63. rps9 ENSDARG00000011405, ENSDARG00000113248 301.13 2257.33 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
64. rpsa ENSDARG00000019181 301.13 2257.33 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
65. selt1a 301.13 2257.33 selenoprotein T, 1a
66. zgc:161979 zgc:161979 301.13 2257.33
67. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 301.13 2257.33 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
68. AC024175.17 AC024175.17 225.85 1693.02
69. COX5B_1 ENSDARG00000015978 225.85 1693.02 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
70. RNF144B ENSDARG00000024940 225.85 1693.02 ring finger protein 144B [Source:ZFIN;Acc:ZDB-GENE-040426-1292]
71. UBC ENSDARG00000102632 225.85 1693.02 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
72. atf4b1 atf4b1 225.85 1693.02
73. atp2a1 ENSDARG00000020574 225.85 1693.02 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
74. atp5a1 225.85 1693.02 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
75. atp5c1 225.85 1693.02 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant 3
76. atp6v1f ENSDARG00000045543 225.85 1693.02 ATPase H+ transporting V1 subunit F [Source:ZFIN;Acc:ZDB-GENE-040718-259]
77. calua ENSDARG00000045676 225.85 1693.02 calumenin a [Source:ZFIN;Acc:ZDB-GENE-040625-166]
78. cnn2 ENSDARG00000035858 225.85 1693.02 calponin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-542]
79. cox6b2 ENSDARG00000037860 225.85 1693.02 cytochrome c oxidase subunit 6B2 [Source:ZFIN;Acc:ZDB-GENE-040426-1566]
80. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 225.85 1693.02 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
81. hbbe3 ENSDARG00000038147, ENSDARG00000109344 225.85 1693.02 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
82. hspa8 ENSDARG00000068992, ENSDARG00000114726 225.85 1693.02 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
83. hypk ENSDARG00000059725 225.85 1693.02 huntingtin interacting protein K [Source:ZFIN;Acc:ZDB-GENE-080515-6]
84. mlf2 ENSDARG00000034616, ENSDARG00000110660 225.85 1693.02 myeloid leukemia factor 2 [Source:ZFIN;Acc:ZDB-GENE-050913-67]
85. oaz1a ENSDARG00000071403 225.85 1693.02 ornithine decarboxylase antizyme 1a [Source:ZFIN;Acc:ZDB-GENE-020731-4]
86. pabpc1a ENSDARG00000017219 225.85 1693.02 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
87. ppl ENSDARG00000101043 225.85 1693.02 periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
88. prps1a ENSDARG00000015524 225.85 1693.02 phosphoribosyl pyrophosphate synthetase 1A [Source:ZFIN;Acc:ZDB-GENE-011212-5]
89. rab1a rab1a 225.85 1693.02
90. rbfox1l ENSDARG00000021184, ENSDARG00000111700 225.85 1693.02 RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
91. rhoae rhoae 225.85 1693.02
92. rpl18 ENSDARG00000029533 225.85 1693.02 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
93. rpl27 ENSDARG00000015128 225.85 1693.02 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
94. rpl30 ENSDARG00000035871, ENSDARG00000109253 225.85 1693.02 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
95. rpl36 ENSDARG00000100588 225.85 1693.02 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
96. rps12 ENSDARG00000036875, ENSDARG00000115157 225.85 1693.02 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
97. rps15a ENSDARG00000010160 225.85 1693.02 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
98. rps2 ENSDARG00000077291 225.85 1693.02 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
99. rps27.2 ENSDARG00000055475 225.85 1693.02 ribosomal protein S27, isoform 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1735]
100. sepp1a 225.85 1693.02 selenoprotein P, plasma, 1a
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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