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Experiment Zebrafish_28hpf_trunk2, section s16.

Sample reads: 133,409. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 28709.95 215202.98
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4756.66 35654.80 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 2225.89 16684.74 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. apoeb ENSDARG00000040295 1891.33 14176.96 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
5. apoc1l apoc1l 1845.47 13833.21
6. zgc:161979 zgc:161979 1656.60 12417.48
7. apoa1b ENSDARG00000101324 1475.83 11062.47 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
8. actb2 ENSDARG00000037870 1470.44 11022.07 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. apoa2 ENSDARG00000015866 1440.76 10799.60 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
10. apobb apobb 1421.87 10658.00
11. zgc:161979_1 zgc:161979_1 1200.63 8999.64
12. actb1 ENSDARG00000037746, ENSDARG00000113649 925.43 6936.80 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
13. apoa1a ENSDARG00000012076, ENSDARG00000110395 795.92 5966.03 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
14. mt-nd2 ENSDARG00000063899 723.08 5420.04 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
15. fabp2 ENSDARG00000006427, ENSDARG00000110230 688.00 5157.08 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
16. apoa4 apoa4 617.85 4631.26
17. eef1a1l1 ENSDARG00000020850 615.16 4611.09 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
18. mt-co2 ENSDARG00000063908 561.19 4206.55 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
19. mt-nd4 ENSDARG00000063917 558.50 4186.38 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
20. si:dkey-150i13.2 ENSDARG00000071052 531.52 3984.15 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
21. ctsla ENSDARG00000007836 488.35 3660.56 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
22. zgc:153129 zgc:153129 455.97 3417.84
23. bhmt ENSDARG00000013430 447.88 3357.20 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
24. mt-co3 ENSDARG00000063912 415.50 3114.49 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
25. eef2b ENSDARG00000100371, ENSDARG00000109247 380.43 2851.61 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
26. si:dkey-151g10.6 si:dkey-151g10.6 380.43 2851.61
27. cfl1l ENSDARG00000012972 375.03 2811.14 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
28. fetub ENSDARG00000053973 345.35 2588.66 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
29. hmga1a ENSDARG00000028335 323.77 2426.90 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
30. mt-nd1 ENSDARG00000063895 321.07 2406.66 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
31. ppiaa ENSDARG00000009212 312.97 2345.95 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
32. hspa8 ENSDARG00000068992, ENSDARG00000114726 302.18 2265.07 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
33. zgc:112425 zgc:112425 302.18 2265.07
34. mt-atp6 ENSDARG00000063911 277.90 2083.07 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
35. gatm ENSDARG00000036239 259.01 1941.48 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
36. rpl21 ENSDARG00000010516, ENSDARG00000110263 250.92 1880.84 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
37. h1f0 ENSDARG00000038559 240.13 1799.96 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
38. hsp90ab1 ENSDARG00000029150 240.13 1799.96 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
39. si:dkeyp-86f7.3 si:dkeyp-86f7.3 234.73 1759.48
40. zgc:92533 zgc:92533 234.73 1759.48
41. rbp4 ENSDARG00000101199 232.03 1739.24 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
42. ptmab ENSDARG00000101766 229.33 1719.00 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
43. cyt1l ENSDARG00000036832 226.64 1698.84 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
44. slc43a2b ENSDARG00000061120, ENSDARG00000117188 226.64 1698.84 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
45. mt2 ENSDARG00000041623, ENSDARG00000113583 223.94 1678.60 metallothionein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4174]
46. col1a1a ENSDARG00000012405, ENSDARG00000116113 221.24 1658.36 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
47. pabpc1a ENSDARG00000017219 221.24 1658.36 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
48. atp6v1g1 ENSDARG00000022315, ENSDARG00000110951 218.54 1638.12 ATPase H+ transporting V1 subunit G1 [Source:ZFIN;Acc:ZDB-GENE-030131-6965]
49. UBC ENSDARG00000102632 210.45 1577.48 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
50. bcam ENSDARG00000090190 202.35 1516.77 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
51. prdx5 ENSDARG00000055064 196.96 1476.37 peroxiredoxin 5 [Source:ZFIN;Acc:ZDB-GENE-050522-159]
52. sepp1a 196.96 1476.37 selenoprotein P, plasma, 1a
53. AC024175.17 AC024175.17 194.26 1456.13
54. rpl26 ENSDARG00000102317 194.26 1456.13 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
55. ssr2 ENSDARG00000005230 194.26 1456.13 signal sequence receptor, beta [Source:ZFIN;Acc:ZDB-GENE-010413-1]
56. mt-cyb ENSDARG00000063924 191.56 1435.89 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
57. rpl9 ENSDARG00000037350, ENSDARG00000112384 188.86 1415.65 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
58. krt8 ENSDARG00000058358, ENSDARG00000109279 183.47 1375.25 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
59. rpl18a ENSDARG00000025073 183.47 1375.25 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
60. rpl8 ENSDARG00000014867 183.47 1375.25 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
61. dbi ENSDARG00000026369 180.77 1355.01 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) [Source:ZFIN;Acc:ZDB-GENE-040426-1861]
62. btf3 ENSDARG00000035400, ENSDARG00000116462 178.07 1334.77 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
63. eif5a ENSDARG00000017235 175.37 1314.53 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
64. APOA4 APOA4 172.68 1294.37
65. rpl10a ENSDARG00000042905, ENSDARG00000115649 172.68 1294.37 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
66. abca1b ENSDARG00000079009 164.58 1233.65 ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
67. pfn1 ENSDARG00000088091 164.58 1233.65 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
68. icn ENSDARG00000009978 161.88 1213.41 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
69. rpl7 ENSDARG00000007320 161.88 1213.41 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
70. npc2 ENSDARG00000090912 159.18 1193.18 Niemann-Pick disease, type C2 [Source:ZFIN;Acc:ZDB-GENE-021206-13]
71. APOB APOB 156.49 1173.01
72. rps5 ENSDARG00000043453 156.49 1173.01 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
73. mt-co1 ENSDARG00000063905 153.79 1152.77 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
74. mat1a ENSDARG00000039605, ENSDARG00000115975 148.39 1112.30 methionine adenosyltransferase I, alpha [Source:ZFIN;Acc:ZDB-GENE-030131-6127]
75. rplp1 ENSDARG00000021864 148.39 1112.30 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
76. aldob ENSDARG00000053684 145.69 1092.06 aldolase b, fructose-bisphosphate [Source:ZFIN;Acc:ZDB-GENE-030131-383]
77. rpl23 ENSDARG00000053457 145.69 1092.06 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
78. tfa ENSDARG00000016771 145.69 1092.06 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
79. paics ENSDARG00000033539 143.00 1071.89 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
80. rpl36a ENSDARG00000058105, ENSDARG00000112656 143.00 1071.89 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
81. id1 ENSDARG00000040764 137.60 1031.42 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
82. si:ch1073-429i10.3 137.60 1031.42 si:ch1073-429i10.3, transcript variant X2
83. capns1b ENSDARG00000013804 134.90 1011.18 calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
84. hdlbp hdlbp 134.90 1011.18
85. rpl11 ENSDARG00000043509 134.90 1011.18 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
86. rps23 ENSDARG00000021838 134.90 1011.18 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
87. rps9 ENSDARG00000011405, ENSDARG00000113248 134.90 1011.18 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
88. btg1 ENSDARG00000027249 132.20 990.94 B-cell translocation gene 1, anti-proliferative [Source:ZFIN;Acc:ZDB-GENE-010726-1]
89. prps1a ENSDARG00000015524 132.20 990.94 phosphoribosyl pyrophosphate synthetase 1A [Source:ZFIN;Acc:ZDB-GENE-011212-5]
90. rpl27 ENSDARG00000015128 132.20 990.94 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
91. rps26l ENSDARG00000030408 132.20 990.94 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
92. apoc2 ENSDARG00000092155 129.51 970.78 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
93. krt5 ENSDARG00000058371, ENSDARG00000112017 129.51 970.78 keratin 5 [Source:ZFIN;Acc:ZDB-GENE-991110-23]
94. rpl19 ENSDARG00000013307 129.51 970.78 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
95. FP067396.1 FP067396.1 126.81 950.54
96. gamt ENSDARG00000070844, ENSDARG00000109945 126.81 950.54 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
97. rpl36 ENSDARG00000100588 126.81 950.54 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
98. rps27a ENSDARG00000032725, ENSDARG00000114059 126.81 950.54 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
99. ctsll ENSDARG00000011701, ENSDARG00000112885 124.11 930.30 cathepsin L, like [Source:ZFIN;Acc:ZDB-GENE-041010-76]
100. rpl18 ENSDARG00000029533 124.11 930.30 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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