Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s13.

Sample reads: 133,396. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 27458.05 205839.29
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3411.60 25575.06 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoc1l apoc1l 1699.00 12736.55
4. apoeb ENSDARG00000040295 1619.30 12139.08 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
5. tmsb4x ENSDARG00000077777 1541.54 11556.16 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. zgc:161979 zgc:161979 1520.16 11395.88
7. apoa1b ENSDARG00000101324 1516.27 11366.72 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
8. apoa2 ENSDARG00000015866 1508.49 11308.40 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
9. apobb apobb 1288.83 9661.72
10. mt-nd2 ENSDARG00000063899 1218.85 9137.11 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
11. zgc:161979_1 zgc:161979_1 1214.96 9107.95
12. actb2 ENSDARG00000037870 1156.64 8670.75 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. mt-nd4 ENSDARG00000063917 966.13 7242.59 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
14. mt-co2 ENSDARG00000063908 861.16 6455.69 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
15. apoa1a ENSDARG00000012076, ENSDARG00000110395 769.80 5770.81 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
16. eef1a1l1 ENSDARG00000020850 760.08 5697.94 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. actb1 ENSDARG00000037746, ENSDARG00000113649 746.47 5595.91 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
18. mt-co3 ENSDARG00000063912 670.66 5027.60 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. mt-atp6 ENSDARG00000063911 647.33 4852.71 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
20. mt-nd1 ENSDARG00000063895 585.12 4386.35 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
21. fabp2 ENSDARG00000006427, ENSDARG00000110230 573.46 4298.94 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
22. si:dkey-150i13.2 ENSDARG00000071052 515.14 3861.75 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
23. ctsla ENSDARG00000007836 509.31 3818.04 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
24. apoa4 apoa4 501.53 3759.72
25. atp1b1a ENSDARG00000013144 437.38 3278.82 ATPase Na+/K+ transporting subunit beta 1a [Source:ZFIN;Acc:ZDB-GENE-001127-3]
26. eef2b ENSDARG00000100371, ENSDARG00000109247 435.44 3264.28 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
27. si:dkey-151g10.6 si:dkey-151g10.6 381.01 2856.24
28. mt-cyb ENSDARG00000063924 359.63 2695.97 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
29. zgc:153129 zgc:153129 353.80 2652.26
30. fetub ENSDARG00000053973 346.02 2593.94 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
31. bhmt ENSDARG00000013430 336.30 2521.07 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
32. ppiaa ENSDARG00000009212 311.03 2331.64 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
33. hmga1a ENSDARG00000028335 289.65 2171.36 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
34. hspa8 ENSDARG00000068992, ENSDARG00000114726 289.65 2171.36 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
35. atp1a1a.3 ENSDARG00000039131 281.87 2113.04 ATPase Na+/K+ transporting subunit alpha 1a, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-001212-3]
36. rpl10a ENSDARG00000042905, ENSDARG00000115649 277.98 2083.88 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
37. hbbe3 ENSDARG00000038147, ENSDARG00000109344 270.21 2025.63 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
38. zgc:112425 zgc:112425 264.37 1981.85
39. mt-co1 ENSDARG00000063905 258.54 1938.15 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
40. mt2 ENSDARG00000041623, ENSDARG00000113583 256.60 1923.60 metallothionein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4174]
41. btf3 ENSDARG00000035400, ENSDARG00000116462 239.10 1792.41 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
42. gatm ENSDARG00000036239 237.16 1777.87 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
43. hsp90ab1 ENSDARG00000029150 237.16 1777.87 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
44. rbp4 ENSDARG00000101199 235.22 1763.33 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
45. AC024175.17 AC024175.17 233.27 1748.71
46. UBC ENSDARG00000102632 227.44 1705.00 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
47. cfl1l ENSDARG00000012972 225.50 1690.46 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
48. rpl23 ENSDARG00000053457 225.50 1690.46 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
49. rpl26 ENSDARG00000102317 223.55 1675.84 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
50. rpl8 ENSDARG00000014867 213.83 1602.98 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
51. rpl21 ENSDARG00000010516, ENSDARG00000110263 209.94 1573.82 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
52. ptmab ENSDARG00000101766 204.11 1530.11 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
53. ATP5B 202.17 1515.57 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
54. rps27a ENSDARG00000032725, ENSDARG00000114059 202.17 1515.57 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
55. atp6v1g1 ENSDARG00000022315, ENSDARG00000110951 198.28 1486.41 ATPase H+ transporting V1 subunit G1 [Source:ZFIN;Acc:ZDB-GENE-030131-6965]
56. hbae3 ENSDARG00000079305 192.45 1442.70 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
57. krt8 ENSDARG00000058358, ENSDARG00000109279 192.45 1442.70 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
58. APOA4 APOA4 190.51 1428.16
59. rpl18a ENSDARG00000025073 188.56 1413.54 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
60. eif5a ENSDARG00000017235 186.62 1399.00 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
61. pabpc1a ENSDARG00000017219 186.62 1399.00 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
62. aldoaa ENSDARG00000011665 184.67 1384.38 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
63. rpl36a ENSDARG00000058105, ENSDARG00000112656 184.67 1384.38 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
64. rpl19 ENSDARG00000013307 180.79 1355.29 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
65. rps14 ENSDARG00000036629 180.79 1355.29 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
66. tfa ENSDARG00000016771 178.84 1340.67 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
67. ldhba ENSDARG00000019644 176.90 1326.13 lactate dehydrogenase Ba [Source:ZFIN;Acc:ZDB-GENE-991026-6]
68. rpl27 ENSDARG00000015128 174.95 1311.51 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
69. rpl11 ENSDARG00000043509 171.07 1282.43 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
70. rpl36 ENSDARG00000100588 171.07 1282.43 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
71. rplp1 ENSDARG00000021864 171.07 1282.43 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
72. rps23 ENSDARG00000021838 171.07 1282.43 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
73. atp5a1 167.18 1253.27 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
74. pfn1 ENSDARG00000088091 167.18 1253.27 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
75. rpl7 ENSDARG00000007320 167.18 1253.27 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
76. tpma ENSDARG00000033683 165.23 1238.65 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
77. si:dkeyp-86f7.3 si:dkeyp-86f7.3 163.29 1224.10
78. ctsba ENSDARG00000055120 161.35 1209.56 cathepsin Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2650]
79. h1f0 ENSDARG00000038559 161.35 1209.56 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
80. rps9 ENSDARG00000011405, ENSDARG00000113248 161.35 1209.56 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
81. sepp1a 161.35 1209.56 selenoprotein P, plasma, 1a
82. AL954137.2 ENSDARG00000114408 159.40 1194.94
83. rps2 ENSDARG00000077291 159.40 1194.94 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
84. npc2 ENSDARG00000090912 157.46 1180.40 Niemann-Pick disease, type C2 [Source:ZFIN;Acc:ZDB-GENE-021206-13]
85. gamt ENSDARG00000070844, ENSDARG00000109945 155.51 1165.78 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
86. slc43a2b ENSDARG00000061120, ENSDARG00000117188 153.57 1151.24 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
87. psap ENSDARG00000013968 149.68 1122.08 prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]
88. cox8a ENSDARG00000095273 147.74 1107.53 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
89. cyt1l ENSDARG00000036832 147.74 1107.53 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
90. paics ENSDARG00000033539 145.79 1092.91 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
91. rpl9 ENSDARG00000037350, ENSDARG00000112384 145.79 1092.91 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
92. APOB APOB 141.91 1063.83
93. dbi ENSDARG00000026369 141.91 1063.83 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) [Source:ZFIN;Acc:ZDB-GENE-040426-1861]
94. rps19 ENSDARG00000030602 141.91 1063.83 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
95. zgc:153867 139.96 1049.21 zgc:153867, transcript variant X2
96. mat1a ENSDARG00000039605, ENSDARG00000115975 136.08 1020.12 methionine adenosyltransferase I, alpha [Source:ZFIN;Acc:ZDB-GENE-030131-6127]
97. rpl15 ENSDARG00000009285 136.08 1020.12 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
98. rps27.1 ENSDARG00000023298 136.08 1020.12 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
99. cd63 ENSDARG00000025147, ENSDARG00000115979 134.13 1005.51 CD63 molecule [Source:ZFIN;Acc:ZDB-GENE-030131-180]
100. actc1b ENSDARG00000099197 132.19 990.96 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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