Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s12.

Sample reads: 133,411. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 20962.98 157130.33
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3892.36 29175.61 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1520.95 11400.45 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. mt-co2 ENSDARG00000063908 1431.95 10733.34 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. zgc:161979 zgc:161979 1396.35 10466.50
6. apoa1b ENSDARG00000101324 1362.72 10214.42 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
7. mt-nd2 ENSDARG00000063899 1342.94 10066.15 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. actb2 ENSDARG00000037870 1325.14 9932.73 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. apoeb ENSDARG00000040295 1325.14 9932.73 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
10. apoc1l apoc1l 1295.48 9710.41
11. zgc:161979_1 zgc:161979_1 1166.92 8746.78
12. apoa2 ENSDARG00000015866 1141.21 8554.07 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
13. mt-nd4 ENSDARG00000063917 1089.78 8168.57 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
14. apobb apobb 992.87 7442.17
15. mt-co3 ENSDARG00000063912 921.67 6908.48 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. mt-atp6 ENSDARG00000063911 797.06 5974.45 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
17. eef1a1l1 ENSDARG00000020850 787.17 5900.32 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
18. actb1 ENSDARG00000037746, ENSDARG00000113649 779.26 5841.03 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
19. mt-nd1 ENSDARG00000063895 623.02 4669.92 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
20. si:dkey-151g10.6 si:dkey-151g10.6 593.35 4447.52
21. apoa1a ENSDARG00000012076, ENSDARG00000110395 561.70 4210.28 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
22. ppiaa ENSDARG00000009212 532.04 3987.96 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
23. eef2b ENSDARG00000100371, ENSDARG00000109247 490.50 3676.60 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
24. apoa4 apoa4 474.68 3558.02
25. mt-cyb ENSDARG00000063924 470.72 3528.33 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
26. fabp2 ENSDARG00000006427, ENSDARG00000110230 454.90 3409.75 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
27. si:dkey-150i13.2 ENSDARG00000071052 421.28 3157.75 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
28. hbbe3 ENSDARG00000038147, ENSDARG00000109344 415.34 3113.23 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
29. bhmt ENSDARG00000013430 395.57 2965.04 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
30. ctsla ENSDARG00000007836 395.57 2965.04 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
31. zgc:112425 zgc:112425 377.76 2831.54
32. hspa8 ENSDARG00000068992, ENSDARG00000114726 357.99 2683.35 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
33. atp1b1a ENSDARG00000013144 356.01 2668.51 ATPase Na+/K+ transporting subunit beta 1a [Source:ZFIN;Acc:ZDB-GENE-001127-3]
34. zgc:153129 zgc:153129 344.14 2579.54
35. rpl26 ENSDARG00000102317 334.25 2505.41 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
36. hbae3 ENSDARG00000079305 324.36 2431.28 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
37. hmga1a ENSDARG00000028335 324.36 2431.28 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
38. mt-co1 ENSDARG00000063905 320.41 2401.67 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
39. zgc:66286 zgc:66286 318.43 2386.83
40. fetub ENSDARG00000053973 292.72 2194.12 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
41. pabpc1a ENSDARG00000017219 288.76 2164.43 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
42. rpl10a ENSDARG00000042905, ENSDARG00000115649 288.76 2164.43 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
43. rpl36a ENSDARG00000058105, ENSDARG00000112656 284.81 2134.82 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
44. rpl23 ENSDARG00000053457 267.01 2001.40 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
45. rpl8 ENSDARG00000014867 263.05 1971.72 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
46. AC024175.17 AC024175.17 261.07 1956.88
47. rps27a ENSDARG00000032725, ENSDARG00000114059 257.12 1927.27 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
48. rpl18a ENSDARG00000025073 251.18 1882.75 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
49. rps14 ENSDARG00000036629 247.23 1853.14 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
50. rps23 ENSDARG00000021838 247.23 1853.14 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
51. rpl9 ENSDARG00000037350, ENSDARG00000112384 245.25 1838.30 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
52. cfl1l ENSDARG00000012972 241.29 1808.62 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
53. btf3 ENSDARG00000035400, ENSDARG00000116462 233.38 1749.33 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
54. rps26l ENSDARG00000030408 233.38 1749.33 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
55. rplp1 ENSDARG00000021864 229.43 1719.72 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
56. hsp90ab1 ENSDARG00000029150 225.47 1690.04 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
57. rpl27 ENSDARG00000015128 225.47 1690.04 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
58. ATP5B 223.49 1675.19 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
59. rpl11 ENSDARG00000043509 223.49 1675.19 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
60. rps2 ENSDARG00000077291 223.49 1675.19 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
61. gatm ENSDARG00000036239 221.52 1660.43 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
62. eif5a ENSDARG00000017235 219.54 1645.59 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
63. tpm3 ENSDARG00000005162 219.54 1645.59 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
64. myl10 ENSDARG00000062592 217.56 1630.74 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
65. rpl36 ENSDARG00000100588 215.58 1615.90 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
66. rpl19 ENSDARG00000013307 213.61 1601.14 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
67. rpl21 ENSDARG00000010516, ENSDARG00000110263 211.63 1586.30 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
68. rpl7 ENSDARG00000007320 205.69 1541.77 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
69. mt2 ENSDARG00000041623, ENSDARG00000113583 195.80 1467.64 metallothionein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4174]
70. rbp4 ENSDARG00000101199 195.80 1467.64 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
71. actc1b ENSDARG00000099197 193.83 1452.87 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
72. RPL29 ENSDARG00000077717 191.85 1438.03 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
73. rpl18 ENSDARG00000029533 191.85 1438.03 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
74. rps9 ENSDARG00000011405, ENSDARG00000113248 191.85 1438.03 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
75. hbae1_1 187.89 1408.35 hemoglobin, alpha embryonic 1
76. krt8 ENSDARG00000058358, ENSDARG00000109279 185.92 1393.58 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
77. h1f0 ENSDARG00000038559 181.96 1363.90 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
78. UBC ENSDARG00000102632 179.98 1349.06 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
79. cyt1l ENSDARG00000036832 179.98 1349.06 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
80. rps6 ENSDARG00000019778 179.98 1349.06 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
81. si:dkeyp-86f7.3 si:dkeyp-86f7.3 170.09 1274.93
82. rps5 ENSDARG00000043453 168.12 1260.16 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
83. tpma ENSDARG00000033683 166.14 1245.32 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
84. rps15a ENSDARG00000010160 164.16 1230.48 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
85. rpl15 ENSDARG00000009285 162.18 1215.64 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
86. AL954137.2 ENSDARG00000114408 160.20 1200.80
87. dbi ENSDARG00000026369 160.20 1200.80 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) [Source:ZFIN;Acc:ZDB-GENE-040426-1861]
88. paics ENSDARG00000033539 160.20 1200.80 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
89. rps15 ENSDARG00000070849, ENSDARG00000110979 160.20 1200.80 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
90. rps27.1 ENSDARG00000023298 160.20 1200.80 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
91. id1 ENSDARG00000040764 158.23 1186.03 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
92. rpl14 ENSDARG00000103433 156.25 1171.19 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
93. prdx5 ENSDARG00000055064 154.27 1156.35 peroxiredoxin 5 [Source:ZFIN;Acc:ZDB-GENE-050522-159]
94. COX5B_1 ENSDARG00000015978 152.29 1141.51 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
95. ckma ENSDARG00000035327, ENSDARG00000114671 152.29 1141.51 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
96. ldhba ENSDARG00000019644 152.29 1141.51 lactate dehydrogenase Ba [Source:ZFIN;Acc:ZDB-GENE-991026-6]
97. rplp0 ENSDARG00000051783 152.29 1141.51 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
98. rps19 ENSDARG00000030602 152.29 1141.51 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
99. sepp1a 152.29 1141.51 selenoprotein P, plasma, 1a
100. hbbe1.1 ENSDARG00000113599 150.31 1126.67 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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