Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s11.

Sample reads: 133,411. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 28482.43 213493.72
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2687.52 20144.65 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1433.50 10744.98 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. mt-nd4 ENSDARG00000063917 1128.97 8462.34 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
5. apoeb ENSDARG00000040295 1042.12 7811.34 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
6. tmsb4x ENSDARG00000077777 1009.70 7568.34 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. apoc1l apoc1l 937.91 7030.23
8. apoa2 ENSDARG00000015866 910.12 6821.92 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
9. mt-co2 ENSDARG00000063908 908.96 6813.23 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
10. mt-co3 ENSDARG00000063912 876.54 6570.22 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
11. zgc:161979 zgc:161979 875.38 6561.52
12. actb2 ENSDARG00000037870 874.23 6552.90 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. eef1a1l1 ENSDARG00000020850 824.44 6179.70 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
14. apoa1b ENSDARG00000101324 758.44 5684.98 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
15. mt-atp6 ENSDARG00000063911 694.75 5207.59 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. apobb apobb 680.85 5103.40
17. zgc:161979_1 zgc:161979_1 664.64 4981.89
18. mt-nd1 ENSDARG00000063895 613.70 4600.07 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
19. si:dkey-150i13.2 ENSDARG00000071052 568.54 4261.56 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
20. actb1 ENSDARG00000037746, ENSDARG00000113649 558.12 4183.46 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
21. si:dkey-151g10.6 si:dkey-151g10.6 553.48 4148.68
22. tpma ENSDARG00000033683 528.01 3957.77 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
23. hbbe3 ENSDARG00000038147, ENSDARG00000109344 507.17 3801.56 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
24. ppiaa ENSDARG00000009212 486.32 3645.27 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
25. eef2b ENSDARG00000100371, ENSDARG00000109247 422.64 3167.95 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
26. mt-cyb ENSDARG00000063924 419.17 3141.94 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
27. apoa1a ENSDARG00000012076, ENSDARG00000110395 418.01 3133.25 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
28. ckmb ENSDARG00000040565 412.22 3089.85 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
29. hspa8 ENSDARG00000068992, ENSDARG00000114726 389.06 2916.25 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
30. hbae3 ENSDARG00000079305 364.74 2733.96 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
31. fabp2 ENSDARG00000006427, ENSDARG00000110230 361.27 2707.95 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
32. ctsla ENSDARG00000007836 356.64 2673.24 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
33. rpl10a ENSDARG00000042905, ENSDARG00000115649 347.37 2603.76 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
34. zgc:112425 zgc:112425 346.22 2595.14
35. zgc:66286 zgc:66286 338.11 2534.35
36. actc1b ENSDARG00000099197 336.95 2525.65 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
37. rpl21 ENSDARG00000010516, ENSDARG00000110263 331.16 2482.25 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
38. ckma ENSDARG00000035327, ENSDARG00000114671 330.01 2473.63 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
39. rpl23 ENSDARG00000053457 327.69 2456.24 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
40. rpl26 ENSDARG00000102317 317.27 2378.14 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
41. rpl8 ENSDARG00000014867 313.80 2352.13 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
42. atp1b1a ENSDARG00000013144 312.64 2343.43 ATPase Na+/K+ transporting subunit beta 1a [Source:ZFIN;Acc:ZDB-GENE-001127-3]
43. btf3 ENSDARG00000035400, ENSDARG00000116462 296.43 2221.93 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
44. mt-co1 ENSDARG00000063905 294.11 2204.54 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
45. rpl36a ENSDARG00000058105, ENSDARG00000112656 292.95 2195.84 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
46. rps27a ENSDARG00000032725, ENSDARG00000114059 292.95 2195.84 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
47. hmga1a ENSDARG00000028335 282.53 2117.74 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
48. zgc:153129 zgc:153129 274.43 2057.03
49. apoa4 apoa4 273.27 2048.33
50. rpl9 ENSDARG00000037350, ENSDARG00000112384 270.95 2030.94 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
51. rps23 ENSDARG00000021838 258.22 1935.52 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
52. rps14 ENSDARG00000036629 257.06 1926.83 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
53. eif5a ENSDARG00000017235 243.16 1822.64 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
54. bhmt ENSDARG00000013430 242.00 1813.94 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
55. rpl11 ENSDARG00000043509 237.37 1779.24 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
56. rps2 ENSDARG00000077291 237.37 1779.24 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
57. hsp90aa1.1 ENSDARG00000010478 236.21 1770.54 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
58. rplp1 ENSDARG00000021864 229.27 1718.52 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
59. rpl27 ENSDARG00000015128 228.11 1709.83 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
60. AC024175.17 AC024175.17 226.95 1701.13
61. rps9 ENSDARG00000011405, ENSDARG00000113248 220.00 1649.04 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
62. rpl19 ENSDARG00000013307 217.69 1631.72 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
63. rpl18a ENSDARG00000025073 211.90 1588.32 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
64. ATP5B 208.42 1562.24 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
65. rps26l ENSDARG00000030408 206.11 1544.92 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
66. fabp3 ENSDARG00000023290 203.79 1527.53 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
67. rpl18 ENSDARG00000029533 202.64 1518.91 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
68. rpl7 ENSDARG00000007320 199.16 1492.83 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
69. tpm3 ENSDARG00000005162 198.00 1484.13 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
70. hsp90ab1 ENSDARG00000029150 194.53 1458.12 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
71. atp2a1 ENSDARG00000020574 192.21 1440.73 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
72. pabpc1a ENSDARG00000017219 192.21 1440.73 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
73. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 187.58 1406.03 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
74. UBC ENSDARG00000102632 184.11 1380.02 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
75. acta1a ENSDARG00000036371 179.48 1345.32 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
76. hbbe1.1 ENSDARG00000113599 179.48 1345.32 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
77. myl10 ENSDARG00000062592 176.00 1319.23 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
78. rps12 ENSDARG00000036875, ENSDARG00000115157 176.00 1319.23 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
79. h1f0 ENSDARG00000038559 174.85 1310.61 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
80. rpl36 ENSDARG00000100588 174.85 1310.61 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
81. RPL29 ENSDARG00000077717 171.37 1284.53 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
82. rps15a ENSDARG00000010160 170.21 1275.83 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
83. rps6 ENSDARG00000019778 170.21 1275.83 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
84. atp5g3b 167.90 1258.52 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
85. faua ENSDARG00000099022 167.90 1258.52 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
86. aldoaa ENSDARG00000011665 166.74 1249.82 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
87. mylz3 ENSDARG00000017441 165.58 1241.13 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
88. rplp0 ENSDARG00000051783 164.42 1232.43 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
89. rps19 ENSDARG00000030602 164.42 1232.43 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
90. rps4x ENSDARG00000014690 163.27 1223.81 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
91. fetub ENSDARG00000053973 160.95 1206.42 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
92. rpsa ENSDARG00000019181 157.48 1180.41 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
93. rbp4 ENSDARG00000101199 155.16 1163.02 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
94. rps15 ENSDARG00000070849, ENSDARG00000110979 154.00 1154.33 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
95. rps27.1 ENSDARG00000023298 154.00 1154.33 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
96. si:dkeyp-86f7.3 si:dkeyp-86f7.3 154.00 1154.33
97. tnnc2 ENSDARG00000070835, ENSDARG00000111155 154.00 1154.33 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
98. atp5a1 152.84 1145.63 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
99. rpl15 ENSDARG00000009285 151.69 1137.01 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
100. mt2 ENSDARG00000041623, ENSDARG00000113583 148.21 1110.93 metallothionein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4174]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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