Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s1.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 26702.23 200165.29
2. tpma ENSDARG00000033683 1565.57 11735.83 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 1384.00 10374.74 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. mt-nd2 ENSDARG00000063899 1245.60 9337.27 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. mt-co2 ENSDARG00000063908 1148.67 8610.66 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. ckmb ENSDARG00000040565 1104.66 8280.75 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
7. mt-nd4 ENSDARG00000063917 1045.83 7839.75 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
8. eef1a1l1 ENSDARG00000020850 995.88 7465.32 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
9. mt-co3 ENSDARG00000063912 987.84 7405.05 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
10. mt-atp6 ENSDARG00000063911 959.06 7189.31 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. actc1b ENSDARG00000099197 941.29 7056.10 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
12. ckma ENSDARG00000035327, ENSDARG00000114671 854.52 6405.65 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
13. si:dkey-151g10.6 si:dkey-151g10.6 810.08 6072.52
14. actb2 ENSDARG00000037870 700.89 5254.01 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
15. mt-nd1 ENSDARG00000063895 699.62 5244.49 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
16. atp2a1 ENSDARG00000020574 678.45 5085.80 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
17. hbbe3 ENSDARG00000038147, ENSDARG00000109344 646.29 4844.72 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
18. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 588.30 4410.02 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
19. ppiaa ENSDARG00000009212 559.52 4194.27 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
20. eef2b ENSDARG00000100371, ENSDARG00000109247 517.62 3880.18 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
21. rpl23 ENSDARG00000053457 501.96 3762.79 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
22. mylz3 ENSDARG00000017441 499.85 3746.98 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
23. myhz1.3 ENSDARG00000067997 498.15 3734.23 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
24. mt-cyb ENSDARG00000063924 492.65 3693.00 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
25. zgc:112425 zgc:112425 484.61 3632.73
26. rpl10a ENSDARG00000042905, ENSDARG00000115649 472.34 3540.76 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
27. tmsb4x ENSDARG00000077777 466.83 3499.45 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
28. tnnc2 ENSDARG00000070835, ENSDARG00000111155 465.56 3489.93 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
29. zgc:66286 zgc:66286 461.76 3461.45
30. rpl21 ENSDARG00000010516, ENSDARG00000110263 435.94 3267.89 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
31. hmga1a ENSDARG00000028335 433.40 3248.85 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
32. hspa8 ENSDARG00000068992, ENSDARG00000114726 427.05 3201.25 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
33. myl10 ENSDARG00000062592 423.66 3175.84 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
34. acta1b ENSDARG00000055618 413.08 3096.53 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
35. rpl8 ENSDARG00000014867 411.39 3083.86 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
36. rpl26 ENSDARG00000102317 410.12 3074.34 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
37. hbae3 ENSDARG00000079305 397.85 2982.36 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
38. btf3 ENSDARG00000035400, ENSDARG00000116462 378.38 2836.41 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
39. acta1a ENSDARG00000036371 358.48 2687.24 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
40. eif5a ENSDARG00000017235 357.64 2680.94 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
41. actb1 ENSDARG00000037746, ENSDARG00000113649 350.02 2623.82 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
42. rpl18a ENSDARG00000025073 337.32 2528.62 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
43. rpl36a ENSDARG00000058105, ENSDARG00000112656 336.90 2525.47 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
44. myl1 ENSDARG00000014196 335.21 2512.80 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
45. rpl9 ENSDARG00000037350, ENSDARG00000112384 331.82 2487.39 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
46. si:dkey-150i13.2 ENSDARG00000071052 325.05 2436.64 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
47. rpl11 ENSDARG00000043509 321.24 2408.08 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
48. rps27a ENSDARG00000032725, ENSDARG00000114059 317.43 2379.52 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
49. ttna ttna 315.74 2366.85
50. rps14 ENSDARG00000036629 309.81 2322.40 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
51. rps2 ENSDARG00000077291 302.62 2268.50 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
52. ttnb ttnb 295.42 2214.53
53. rpl19 ENSDARG00000013307 292.04 2189.19 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
54. rps23 ENSDARG00000021838 276.80 2074.95 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
55. tpm3 ENSDARG00000005162 268.33 2011.46 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
56. rplp1 ENSDARG00000021864 264.53 1982.97 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
57. rpl27 ENSDARG00000015128 263.68 1976.60 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
58. rpl7 ENSDARG00000007320 259.87 1948.04 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
59. hsp90aa1.1 ENSDARG00000010478 259.02 1941.67 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
60. rps26l ENSDARG00000030408 254.37 1906.81 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
61. pvalb2 ENSDARG00000002768, ENSDARG00000114085 250.14 1875.10 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
62. AC024175.17 AC024175.17 245.90 1843.32
63. rplp0 ENSDARG00000051783 244.21 1830.65 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
64. rpl15 ENSDARG00000009285 239.55 1795.72 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
65. rpl36 ENSDARG00000100588 238.28 1786.19 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
66. fabp3 ENSDARG00000023290 235.74 1767.15 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
67. rps9 ENSDARG00000011405, ENSDARG00000113248 235.74 1767.15 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
68. rps15 ENSDARG00000070849, ENSDARG00000110979 232.78 1744.97 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
69. smyhc1 ENSDARG00000099959, ENSDARG00000115916 231.94 1738.67 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
70. tnnt3a ENSDARG00000030270 231.51 1735.45 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
71. mt-co1 ENSDARG00000063905 230.24 1725.93 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
72. rpl18 ENSDARG00000029533 228.55 1713.26 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
73. rps6 ENSDARG00000019778 226.01 1694.22 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
74. tnni2b.1 ENSDARG00000035958 225.16 1687.84 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
75. si:dkeyp-86f7.3 si:dkeyp-86f7.3 219.66 1646.62
76. h1f0 ENSDARG00000038559 219.24 1643.47 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
77. RPL29 ENSDARG00000077717 212.89 1595.87 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
78. ATP5B 211.20 1583.20 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
79. hsp90ab1 ENSDARG00000029150 206.12 1545.12 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
80. rps5 ENSDARG00000043453 205.69 1541.89 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
81. faua ENSDARG00000099022 203.58 1526.08 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
82. rpl5b ENSDARG00000015862, ENSDARG00000109661 201.46 1510.18 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
83. rps4x ENSDARG00000014690 200.62 1503.89 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
84. rps12 ENSDARG00000036875, ENSDARG00000115157 200.19 1500.66 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
85. cirbp cirbp 197.23 1478.48
86. rps19 ENSDARG00000030602 195.96 1468.96 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
87. rps15a ENSDARG00000010160 193.84 1453.06 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
88. tnnt2c ENSDARG00000032242 192.15 1440.40 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
89. aldoab ENSDARG00000034470 190.46 1427.73 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
90. hbae1_1 189.19 1418.21 hemoglobin, alpha embryonic 1
91. AL954137.2 ENSDARG00000114408 187.92 1408.69
92. hbbe1.1 ENSDARG00000113599 187.92 1408.69 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
93. rpsa ENSDARG00000019181 187.92 1408.69 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
94. rps20 ENSDARG00000036044 185.80 1392.79 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
95. atp5g3b 182.42 1367.46 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
96. rpl6 ENSDARG00000058451 181.15 1357.94 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
97. rps27.1 ENSDARG00000023298 178.18 1335.67 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
98. rps10 ENSDARG00000034897 176.49 1323.00 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
99. pcna ENSDARG00000054155 172.68 1294.44 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
100. ptmab ENSDARG00000101766 170.57 1278.63 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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