Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk1, section s8.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 41752.01 312981.64
2. tpma ENSDARG00000033683 1677.76 12576.83 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. mt-co2 ENSDARG00000063908 1409.58 10566.50 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 1396.70 10469.95 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. mt-nd2 ENSDARG00000063899 1394.56 10453.91 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. ckmb ENSDARG00000040565 1138.17 8531.96 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
7. mt-co3 ENSDARG00000063912 1138.17 8531.96 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
8. mt-nd4 ENSDARG00000063917 1136.03 8515.91 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. mt-nd1 ENSDARG00000063895 883.94 6626.20 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
10. mt-atp6 ENSDARG00000063911 880.72 6602.06 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. si:dkey-151g10.6 si:dkey-151g10.6 819.57 6143.66
12. myl10 ENSDARG00000062592 717.66 5379.73 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
13. actc1b ENSDARG00000099197 642.57 4816.84 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
14. ckma ENSDARG00000035327, ENSDARG00000114671 637.21 4776.66 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
15. zgc:66286 zgc:66286 628.62 4712.26
16. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 617.90 4631.91 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
17. tnnc2 ENSDARG00000070835, ENSDARG00000111155 607.17 4551.47 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
18. mylz3 ENSDARG00000017441 570.70 4278.08 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
19. eef1a1l1 ENSDARG00000020850 562.11 4213.69 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
20. mt-cyb ENSDARG00000063924 537.44 4028.76 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
21. ppiaa ENSDARG00000009212 513.84 3851.85 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
22. atp2a1 ENSDARG00000020574 494.53 3707.10 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
23. rpl10a ENSDARG00000042905, ENSDARG00000115649 478.44 3586.48 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
24. rpl23 ENSDARG00000053457 478.44 3586.48 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
25. ttna ttna 460.20 3449.75
26. myhz1.3 ENSDARG00000067997 445.19 3337.24 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
27. actb2 ENSDARG00000037870 439.82 3296.98 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
28. rpl26 ENSDARG00000102317 439.82 3296.98 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
29. rpl8 ENSDARG00000014867 436.60 3272.84 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
30. rpl36a ENSDARG00000058105, ENSDARG00000112656 431.24 3232.66 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
31. btf3 ENSDARG00000035400, ENSDARG00000116462 430.17 3224.64 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
32. ttnb ttnb 425.88 3192.48
33. rpl21 ENSDARG00000010516, ENSDARG00000110263 421.59 3160.33 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
34. tmsb4x ENSDARG00000077777 421.59 3160.33 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
35. tnni2b.1 ENSDARG00000035958 405.49 3039.64 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
36. tpm3 ENSDARG00000005162 389.40 2919.02 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
37. hspa8 ENSDARG00000068992, ENSDARG00000114726 377.60 2830.57 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
38. rpl18a ENSDARG00000025073 376.53 2822.55 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
39. rps14 ENSDARG00000036629 374.39 2806.50 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
40. acta1a ENSDARG00000036371 350.79 2629.59 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
41. rps27a ENSDARG00000032725, ENSDARG00000114059 350.79 2629.59 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
42. rpl36 ENSDARG00000100588 349.71 2621.50 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
43. rps23 ENSDARG00000021838 345.42 2589.34 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
44. rplp1 ENSDARG00000021864 343.28 2573.30 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
45. col2a1a ENSDARG00000069093, ENSDARG00000111202 342.20 2565.20 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
46. myhz2 ENSDARG00000012944 336.84 2525.02 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
47. aldoab ENSDARG00000034470 330.40 2476.75 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
48. rpl11 ENSDARG00000043509 330.40 2476.75 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
49. acta1b ENSDARG00000055618 328.26 2460.70 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
50. rpl9 ENSDARG00000037350, ENSDARG00000112384 326.11 2444.59 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
51. eef2b ENSDARG00000100371, ENSDARG00000109247 318.60 2388.29 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
52. si:dkey-150i13.2 ENSDARG00000071052 307.88 2307.93 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
53. rpl27 ENSDARG00000015128 304.66 2283.79 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
54. rps26l ENSDARG00000030408 303.58 2275.70 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
55. rpl19 ENSDARG00000013307 298.22 2235.52 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
56. AC024175.17 AC024175.17 281.06 2106.88
57. smyhc1 ENSDARG00000099959, ENSDARG00000115916 278.91 2090.77 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
58. tnnt3a ENSDARG00000030270 272.48 2042.57 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
59. zgc:112425 zgc:112425 271.40 2034.47
60. mt-co1 ENSDARG00000063905 270.33 2026.45 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
61. rps12 ENSDARG00000036875, ENSDARG00000115157 269.26 2018.43 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
62. rpl7 ENSDARG00000007320 254.24 1905.84 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
63. hsp90aa1.1 ENSDARG00000010478 251.02 1881.70 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
64. myl1 ENSDARG00000014196 251.02 1881.70 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
65. rps15 ENSDARG00000070849, ENSDARG00000110979 251.02 1881.70 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
66. rps9 ENSDARG00000011405, ENSDARG00000113248 246.73 1849.54 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
67. actb1 ENSDARG00000037746, ENSDARG00000113649 243.51 1825.40 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
68. hmga1a ENSDARG00000028335 242.44 1817.38 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
69. rpl18 ENSDARG00000029533 239.22 1793.24 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
70. fabp3 ENSDARG00000023290 238.15 1785.22 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
71. rps6 ENSDARG00000019778 229.57 1720.90 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
72. rpl14 ENSDARG00000103433 227.42 1704.79 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
73. rps19 ENSDARG00000030602 227.42 1704.79 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
74. rps20 ENSDARG00000036044 224.20 1680.65 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
75. tnnt2c ENSDARG00000032242 223.13 1672.63 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
76. rps5 ENSDARG00000043453 222.06 1664.61 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
77. rps15a ENSDARG00000010160 211.33 1584.17 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
78. col11a1a ENSDARG00000026165, ENSDARG00000115341 207.04 1552.01 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
79. krt18 ENSDARG00000018404, ENSDARG00000109528 207.04 1552.01 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
80. rplp2 ENSDARG00000101406 207.04 1552.01 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
81. RPL29 ENSDARG00000077717 205.97 1543.99 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
82. rps2 ENSDARG00000077291 203.82 1527.88 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
83. rps29 ENSDARG00000041232 202.75 1519.86 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
84. faua ENSDARG00000099022 201.67 1511.76 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
85. rpl15 ENSDARG00000009285 198.46 1487.70 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
86. rps27.1 ENSDARG00000023298 195.24 1463.56 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
87. mt-nd3 ENSDARG00000063914 194.17 1455.54 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
88. rpl35 ENSDARG00000018334 188.80 1415.28 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
89. tnni2a.4 ENSDARG00000029069 186.66 1399.24 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
90. rpl39 ENSDARG00000036316, ENSDARG00000117167 183.44 1375.10 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
91. tpm2 ENSDARG00000104682 183.44 1375.10 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
92. rplp2l ENSDARG00000011201 181.29 1358.99 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
93. pvalb2 ENSDARG00000002768, ENSDARG00000114085 179.15 1342.95 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
94. rpl5b ENSDARG00000015862, ENSDARG00000109661 175.93 1318.81 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
95. eif5a ENSDARG00000017235 174.86 1310.79 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
96. krt8 ENSDARG00000058358, ENSDARG00000109279 174.86 1310.79 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
97. col9a1 col9a1 173.78 1302.69
98. rpl24 ENSDARG00000099104 173.78 1302.69 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
99. desma ENSDARG00000058656 170.57 1278.63 desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]
100. rps4x ENSDARG00000014690 170.57 1278.63 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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