Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk1, section s7.

Sample reads: 133,404. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 27796.23 208361.68
2. tpma ENSDARG00000033683 2392.81 17936.60 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckmb ENSDARG00000040565 1869.55 14014.22 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 1776.71 13318.29 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. mt-nd2 ENSDARG00000063899 1650.81 12374.54 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. mt-co2 ENSDARG00000063908 1340.00 10044.70 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. mt-nd4 ENSDARG00000063917 1148.01 8605.53 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
8. mt-co3 ENSDARG00000063912 1110.24 8322.40 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. mt-atp6 ENSDARG00000063911 1077.20 8074.74 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. ckma ENSDARG00000035327, ENSDARG00000114671 1066.97 7998.05 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
11. actc1b ENSDARG00000099197 1027.62 7703.08 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
12. mt-nd1 ENSDARG00000063895 893.07 6694.49 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
13. atp2a1 ENSDARG00000020574 826.98 6199.08 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
14. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 812.82 6092.93 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
15. eef1a1l1 ENSDARG00000020850 791.57 5933.64 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. mylz3 ENSDARG00000017441 685.35 5137.41 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
17. si:dkey-151g10.6 si:dkey-151g10.6 662.53 4966.35
18. actb2 ENSDARG00000037870 634.20 4753.99 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
19. myhz1.3 ENSDARG00000067997 627.12 4700.92 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
20. tnnc2 ENSDARG00000070835, ENSDARG00000111155 607.45 4553.47 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
21. zgc:66286 zgc:66286 551.58 4134.67
22. ttna ttna 538.99 4040.29
23. mt-cyb ENSDARG00000063924 522.47 3916.46 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
24. ppiaa ENSDARG00000009212 494.93 3710.02 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
25. eef2b ENSDARG00000100371, ENSDARG00000109247 493.35 3698.17 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
26. rpl10a ENSDARG00000042905, ENSDARG00000115649 479.98 3597.95 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
27. tmsb4x ENSDARG00000077777 456.37 3420.97 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
28. hmga1a ENSDARG00000028335 447.72 3356.13 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
29. myl10 ENSDARG00000062592 447.72 3356.13 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
30. zgc:112425 zgc:112425 443.00 3320.75
31. ttnb ttnb 417.03 3126.07
32. rpl8 ENSDARG00000014867 414.67 3108.38 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
33. acta1a ENSDARG00000036371 411.52 3084.77 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
34. myhz2 ENSDARG00000012944 406.01 3043.47 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
35. acta1b ENSDARG00000055618 398.15 2984.55 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
36. hspa8 ENSDARG00000068992, ENSDARG00000114726 396.57 2972.71 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
37. rpl23 ENSDARG00000053457 391.85 2937.32 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
38. btf3 ENSDARG00000035400, ENSDARG00000116462 384.77 2884.25 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
39. aldoab ENSDARG00000034470 380.83 2854.72 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
40. tnni2b.1 ENSDARG00000035958 361.16 2707.27 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
41. rpl18a ENSDARG00000025073 354.87 2660.12 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
42. rpl26 ENSDARG00000102317 354.08 2654.20 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
43. actb1 ENSDARG00000037746, ENSDARG00000113649 351.72 2636.51 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
44. rpl21 ENSDARG00000010516, ENSDARG00000110263 345.43 2589.36 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
45. fabp3 ENSDARG00000023290 341.49 2559.82 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
46. rps27a ENSDARG00000032725, ENSDARG00000114059 330.48 2477.29 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
47. rps23 ENSDARG00000021838 328.12 2459.60 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
48. myl1 ENSDARG00000014196 324.97 2435.99 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
49. rps14 ENSDARG00000036629 316.31 2371.07 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
50. rpl36a ENSDARG00000058105, ENSDARG00000112656 311.59 2335.69 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
51. tnnt3a ENSDARG00000030270 291.92 2188.24 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
52. mt-co1 ENSDARG00000063905 290.35 2176.48 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
53. rpl27 ENSDARG00000015128 287.20 2152.86 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
54. hsp90aa1.1 ENSDARG00000010478 281.69 2111.56 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
55. pvalb2 ENSDARG00000002768, ENSDARG00000114085 281.69 2111.56 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
56. tpm3 ENSDARG00000005162 278.54 2087.95 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
57. rplp1 ENSDARG00000021864 276.97 2076.18 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
58. rpl19 ENSDARG00000013307 270.68 2029.03 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
59. rpl9 ENSDARG00000037350, ENSDARG00000112384 262.81 1970.03 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
60. rps26l ENSDARG00000030408 262.81 1970.03 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
61. rpl36 ENSDARG00000100588 258.09 1934.65 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
62. rps9 ENSDARG00000011405, ENSDARG00000113248 247.07 1852.05 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
63. rps2 ENSDARG00000077291 246.28 1846.13 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
64. eif5a ENSDARG00000017235 239.99 1798.97 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
65. col2a1a ENSDARG00000069093, ENSDARG00000111202 237.63 1781.28 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
66. rpl7 ENSDARG00000007320 237.63 1781.28 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
67. tnni2a.4 ENSDARG00000029069 233.69 1751.75 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
68. rps20 ENSDARG00000036044 228.97 1716.37 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
69. rps15 ENSDARG00000070849, ENSDARG00000110979 222.68 1669.22 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
70. smyhc1 ENSDARG00000099959, ENSDARG00000115916 217.17 1627.92 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
71. ATP5B 216.38 1621.99 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
72. rpl11 ENSDARG00000043509 213.24 1598.46 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
73. rpl18 ENSDARG00000029533 208.51 1563.00 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
74. rps27.1 ENSDARG00000023298 208.51 1563.00 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
75. si:dkey-150i13.2 ENSDARG00000071052 207.73 1557.15 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
76. tnnt2c ENSDARG00000032242 206.94 1551.23 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
77. rps6 ENSDARG00000019778 205.37 1539.46 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
78. rbfox1l ENSDARG00000021184, ENSDARG00000111700 199.86 1498.16 RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
79. desma ENSDARG00000058656 197.50 1480.47 desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]
80. ptmab ENSDARG00000101766 197.50 1480.47 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
81. rpl6 ENSDARG00000058451 196.71 1474.55 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
82. rps5 ENSDARG00000043453 195.93 1468.70 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
83. h1f0 ENSDARG00000038559 194.35 1456.86 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
84. rplp0 ENSDARG00000051783 191.20 1433.24 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
85. rps12 ENSDARG00000036875, ENSDARG00000115157 188.06 1409.71 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
86. rps15a ENSDARG00000010160 184.91 1386.09 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
87. si:dkeyp-86f7.3 si:dkeyp-86f7.3 184.91 1386.09
88. AC024175.17 AC024175.17 183.34 1374.32
89. col11a1a ENSDARG00000026165, ENSDARG00000115341 183.34 1374.32 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
90. col1a1a ENSDARG00000012405, ENSDARG00000116113 181.76 1362.48 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
91. rpl5b ENSDARG00000015862, ENSDARG00000109661 180.19 1350.71 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
92. rps19 ENSDARG00000030602 179.40 1344.79 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
93. rps4x ENSDARG00000014690 179.40 1344.79 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
94. nme2b.2 ENSDARG00000099420 176.25 1321.18 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
95. rpsa ENSDARG00000019181 176.25 1321.18 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
96. rpl15 ENSDARG00000009285 175.47 1315.33 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
97. faua ENSDARG00000099022 174.68 1309.41 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
98. col9a1 col9a1 173.89 1303.49
99. AL954137.2 ENSDARG00000114408 171.53 1285.80
100. gapdh ENSDARG00000043457 169.17 1268.11 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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