Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk1, section s6.

Sample reads: 133,411. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 25954.40 194544.62
2. mt-co2 ENSDARG00000063908 2032.61 15235.70 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
3. tpma ENSDARG00000033683 1942.56 14560.71 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mt-nd2 ENSDARG00000063899 1489.24 11162.79 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. krt4 ENSDARG00000017624, ENSDARG00000115790 1466.15 10989.72 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
6. ckmb ENSDARG00000040565 1257.58 9426.36 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
7. mt-co3 ENSDARG00000063912 1246.81 9345.63 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
8. mt-atp6 ENSDARG00000063911 1192.16 8935.99 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
9. mt-nd4 ENSDARG00000063917 1132.90 8491.80 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. actc1b ENSDARG00000099197 1070.56 8024.52 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
11. si:dkey-151g10.6 si:dkey-151g10.6 1036.70 7770.72
12. ckma ENSDARG00000035327, ENSDARG00000114671 1008.99 7563.02 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
13. mt-nd1 ENSDARG00000063895 908.17 6807.31 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
14. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 835.05 6259.23 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
15. mylz3 ENSDARG00000017441 828.13 6207.36 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
16. eef1a1l1 ENSDARG00000020850 769.64 5768.94 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. atp2a1 ENSDARG00000020574 759.63 5693.91 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
18. rpl10a ENSDARG00000042905, ENSDARG00000115649 730.38 5474.66 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
19. tnnc2 ENSDARG00000070835, ENSDARG00000111155 660.35 4949.74 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
20. ppiaa ENSDARG00000009212 631.87 4736.26 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
21. myhz1.3 ENSDARG00000067997 578.77 4338.25 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
22. mt-cyb ENSDARG00000063924 517.19 3876.67 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
23. rpl23 ENSDARG00000053457 515.66 3865.20 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
24. rpl8 ENSDARG00000014867 509.50 3819.02 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
25. rpl21 ENSDARG00000010516, ENSDARG00000110263 507.96 3807.48 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
26. zgc:66286 zgc:66286 489.49 3669.04
27. rps14 ENSDARG00000036629 487.95 3657.49 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
28. rpl26 ENSDARG00000102317 484.87 3634.41 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
29. actb2 ENSDARG00000037870 480.25 3599.78 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
30. acta1b ENSDARG00000055618 466.40 3495.96 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
31. rpl18a ENSDARG00000025073 464.86 3484.42 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
32. btf3 ENSDARG00000035400, ENSDARG00000116462 452.55 3392.15 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
33. rpl36a ENSDARG00000058105, ENSDARG00000112656 448.70 3363.29 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
34. aldoab ENSDARG00000034470 432.53 3242.09 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
35. hmga1a ENSDARG00000028335 432.53 3242.09 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
36. myl10 ENSDARG00000062592 429.46 3219.07 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
37. rps23 ENSDARG00000021838 429.46 3219.07 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
38. rps27a ENSDARG00000032725, ENSDARG00000114059 427.92 3207.53 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
39. zgc:112425 zgc:112425 425.61 3190.22
40. eef2b ENSDARG00000100371, ENSDARG00000109247 424.07 3178.67 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
41. hspa8 ENSDARG00000068992, ENSDARG00000114726 420.99 3155.59 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
42. rpl36 ENSDARG00000100588 406.37 3046.00 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
43. rps20 ENSDARG00000036044 393.28 2947.88 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
44. acta1a ENSDARG00000036371 390.20 2924.80 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
45. rps26l ENSDARG00000030408 386.36 2896.01 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
46. mt-co1 ENSDARG00000063905 377.12 2826.75 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
47. tmsb4x ENSDARG00000077777 367.89 2757.57 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
48. ttna ttna 367.12 2751.80
49. tnni2b.1 ENSDARG00000035958 360.96 2705.62 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
50. rpl27 ENSDARG00000015128 352.49 2642.14 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
51. rps9 ENSDARG00000011405, ENSDARG00000113248 351.72 2636.36 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
52. rpl9 ENSDARG00000037350, ENSDARG00000112384 345.57 2590.27 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
53. rpl19 ENSDARG00000013307 340.95 2555.64 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
54. myl1 ENSDARG00000014196 330.94 2480.60 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
55. ttnb ttnb 327.09 2451.75
56. rplp1 ENSDARG00000021864 326.33 2446.05 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
57. rpl11 ENSDARG00000043509 323.25 2422.96 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
58. fabp3 ENSDARG00000023290 316.32 2371.02 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
59. rps15 ENSDARG00000070849, ENSDARG00000110979 314.78 2359.47 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
60. tnnt3a ENSDARG00000030270 313.24 2347.93 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
61. myhz2 ENSDARG00000012944 307.08 2301.76 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
62. rpl7 ENSDARG00000007320 305.55 2290.29 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
63. rps5 ENSDARG00000043453 299.39 2244.12 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
64. rps15a ENSDARG00000010160 286.30 2146.00 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
65. rps19 ENSDARG00000030602 274.76 2059.50 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
66. rpl18 ENSDARG00000029533 273.22 2047.96 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
67. rps6 ENSDARG00000019778 273.22 2047.96 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
68. actb1 ENSDARG00000037746, ENSDARG00000113649 272.45 2042.18 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
69. pvalb2 ENSDARG00000002768, ENSDARG00000114085 271.68 2036.41 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
70. eif5a ENSDARG00000017235 267.83 2007.55 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
71. ptmab ENSDARG00000101766 262.45 1967.23 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
72. tpm3 ENSDARG00000005162 254.75 1909.51 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
73. rps12 ENSDARG00000036875, ENSDARG00000115157 253.98 1903.74 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
74. rpl15 ENSDARG00000009285 247.82 1857.57 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
75. rps29 ENSDARG00000041232 247.05 1851.80 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
76. rplp2 ENSDARG00000101406 246.28 1846.02 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
77. rps2 ENSDARG00000077291 245.51 1840.25 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
78. tnni2a.4 ENSDARG00000029069 243.97 1828.71 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
79. rps27.1 ENSDARG00000023298 238.59 1788.38 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
80. rpl6 ENSDARG00000058451 237.05 1776.84 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
81. rpl30 ENSDARG00000035871, ENSDARG00000109253 234.74 1759.52 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
82. rpl5b ENSDARG00000015862, ENSDARG00000109661 233.20 1747.98 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
83. rpsa ENSDARG00000019181 229.35 1719.12 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
84. rps4x ENSDARG00000014690 224.73 1684.49 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
85. rps24 ENSDARG00000039347 218.58 1638.40 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
86. rps7 ENSDARG00000042566 217.04 1626.85 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
87. faua ENSDARG00000099022 215.50 1615.31 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
88. hsp90aa1.1 ENSDARG00000010478 214.73 1609.54 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
89. rplp0 ENSDARG00000051783 213.96 1603.77 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
90. RPL29 ENSDARG00000077717 213.19 1597.99 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
91. rpl14 ENSDARG00000103433 208.57 1563.36 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
92. rpl23a ENSDARG00000006316 204.72 1534.51 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
93. rps10 ENSDARG00000034897 202.41 1517.19 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
94. rps18 ENSDARG00000100392 200.87 1505.65 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
95. tmem38a ENSDARG00000024047 199.34 1494.18 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
96. rpl28 ENSDARG00000005791 198.57 1488.41 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
97. cirbp cirbp 197.80 1482.64
98. rpl22 ENSDARG00000070437 195.49 1465.32 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
99. rpl35 ENSDARG00000018334 195.49 1465.32 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
100. hsp90ab1 ENSDARG00000029150 190.87 1430.69 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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