Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk1, section s31.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 19758.40 148110.11
2. apoa1b ENSDARG00000101324 4376.02 32802.90 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 4110.81 30814.87 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. apoa2 ENSDARG00000015866 2121.71 15904.46 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
5. mt-nd4 ENSDARG00000063917 1989.10 14910.41 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
6. mt-atp6 ENSDARG00000063911 1856.49 13916.36 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
7. apoc1l apoc1l 1723.89 12922.38
8. mt-co2 ENSDARG00000063908 1723.89 12922.38 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. mt-nd2 ENSDARG00000063899 1723.89 12922.38 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
10. apoeb ENSDARG00000040295 1326.07 9940.30 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
11. tpma ENSDARG00000033683 1326.07 9940.30 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
12. apoa1a ENSDARG00000012076, ENSDARG00000110395 1193.46 8946.25 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
13. mt-co3 ENSDARG00000063912 1193.46 8946.25 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. mt-nd1 ENSDARG00000063895 1193.46 8946.25 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
15. BX511252.1 BX511252.1 1060.85 7952.19
16. actb1 ENSDARG00000037746, ENSDARG00000113649 1060.85 7952.19 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
17. bhmt ENSDARG00000013430 1060.85 7952.19 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
18. ckmb ENSDARG00000040565 1060.85 7952.19 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
19. tmsb4x ENSDARG00000077777 1060.85 7952.19 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
20. actb2 ENSDARG00000037870 928.25 6958.22 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. apobb apobb 928.25 6958.22
22. fetub ENSDARG00000053973 928.25 6958.22 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
23. zgc:161979 zgc:161979 928.25 6958.22
24. zgc:161979_1 zgc:161979_1 928.25 6958.22
25. eef1a1l1 ENSDARG00000020850 795.64 5964.16 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
26. ckma ENSDARG00000035327, ENSDARG00000114671 663.03 4970.11 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
27. ctsla ENSDARG00000007836 663.03 4970.11 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
28. rbp4 ENSDARG00000101199 663.03 4970.11 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
29. rpl18a ENSDARG00000025073 663.03 4970.11 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
30. acta1a ENSDARG00000036371 530.43 3976.13 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
31. cyt1l ENSDARG00000036832 530.43 3976.13 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
32. mt-cyb ENSDARG00000063924 530.43 3976.13 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
33. nme2b.2 ENSDARG00000099420 530.43 3976.13 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
34. rps20 ENSDARG00000036044 530.43 3976.13 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
35. rps27a ENSDARG00000032725, ENSDARG00000114059 530.43 3976.13 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
36. si:dkey-151g10.6 si:dkey-151g10.6 530.43 3976.13
37. tnnc2 ENSDARG00000070835, ENSDARG00000111155 530.43 3976.13 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
38. ttnb ttnb 530.43 3976.13
39. zgc:165571 zgc:165571 530.43 3976.13
40. CABZ01111496.1 ENSDARG00000003041 397.82 2982.08 E3 ubiquitin-protein ligase pellino homolog 2-like [Source:NCBI gene;Acc:100334245]
41. actc1b ENSDARG00000099197 397.82 2982.08 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
42. apoa4 apoa4 397.82 2982.08
43. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 397.82 2982.08 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
44. cox8a ENSDARG00000095273 397.82 2982.08 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
45. eif5a ENSDARG00000017235 397.82 2982.08 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
46. fbp1b ENSDARG00000020364, ENSDARG00000111266 397.82 2982.08 fructose-1,6-bisphosphatase 1b [Source:ZFIN;Acc:ZDB-GENE-021206-11]
47. gtpbp4 ENSDARG00000018961 397.82 2982.08 GTP binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5982]
48. hsp90aa1.1 ENSDARG00000010478 397.82 2982.08 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
49. mthfd1l ENSDARG00000042221, ENSDARG00000110473 397.82 2982.08 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like [Source:ZFIN;Acc:ZDB-GENE-041001-133]
50. myl10 ENSDARG00000062592 397.82 2982.08 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
51. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 397.82 2982.08 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
52. ppiaa ENSDARG00000009212 397.82 2982.08 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
53. pvalb9 ENSDARG00000071601, ENSDARG00000113946 397.82 2982.08 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
54. rpl11 ENSDARG00000043509 397.82 2982.08 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
55. rpl18 ENSDARG00000029533 397.82 2982.08 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
56. rpl21 ENSDARG00000010516, ENSDARG00000110263 397.82 2982.08 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
57. rpl22 ENSDARG00000070437 397.82 2982.08 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
58. rpl26 ENSDARG00000102317 397.82 2982.08 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
59. rps12 ENSDARG00000036875, ENSDARG00000115157 397.82 2982.08 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
60. sparc ENSDARG00000019353 397.82 2982.08 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
61. ttna ttna 397.82 2982.08
62. zgc:152830 ENSDARG00000079932 397.82 2982.08 zgc:152830 [Source:ZFIN;Acc:ZDB-GENE-090312-55]
63. zgc:92533 zgc:92533 397.82 2982.08
64. CREM CREM 265.21 1988.03
65. LGALS3 LGALS3 265.21 1988.03
66. abracl ENSDARG00000042876 265.21 1988.03 ABRA C-terminal like [Source:ZFIN;Acc:ZDB-GENE-030131-8594]
67. ahcy ENSDARG00000005191 265.21 1988.03 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
68. apoc2 ENSDARG00000092155 265.21 1988.03 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
69. ass1 265.21 1988.03 argininosuccinate synthase 1
70. btf3 ENSDARG00000035400, ENSDARG00000116462 265.21 1988.03 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
71. cd81 cd81 265.21 1988.03
72. ctsd ENSDARG00000057698, ENSDARG00000110172, ENSDARG00000113876 265.21 1988.03 cathepsin D [Source:ZFIN;Acc:ZDB-GENE-010131-8]
73. dnajc11 265.21 1988.03 DnaJ heat shock protein family (Hsp40) member C11
74. eef2b ENSDARG00000100371, ENSDARG00000109247 265.21 1988.03 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
75. eif1axb ENSDARG00000057912, ENSDARG00000111310 265.21 1988.03 eukaryotic translation initiation factor 1A X-linked b [Source:ZFIN;Acc:ZDB-GENE-030131-1319]
76. fabp2 ENSDARG00000006427, ENSDARG00000110230 265.21 1988.03 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
77. gabarapl2 ENSDARG00000027200 265.21 1988.03 GABA(A) receptor-associated protein like 2 [Source:ZFIN;Acc:ZDB-GENE-040718-336]
78. gamt ENSDARG00000070844, ENSDARG00000109945 265.21 1988.03 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
79. h1f0 ENSDARG00000038559 265.21 1988.03 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
80. hnrnpm ENSDARG00000061735 265.21 1988.03 heterogeneous nuclear ribonucleoprotein M [Source:ZFIN;Acc:ZDB-GENE-030131-6898]
81. krt8 ENSDARG00000058358, ENSDARG00000109279 265.21 1988.03 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
82. myhz1.3 ENSDARG00000067997 265.21 1988.03 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
83. mylpfb ENSDARG00000002589 265.21 1988.03 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
84. mylz3 ENSDARG00000017441 265.21 1988.03 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
85. pfkfb4l pfkfb4l 265.21 1988.03
86. prps1a ENSDARG00000015524 265.21 1988.03 phosphoribosyl pyrophosphate synthetase 1A [Source:ZFIN;Acc:ZDB-GENE-011212-5]
87. rpl19 ENSDARG00000013307 265.21 1988.03 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
88. rpl23 ENSDARG00000053457 265.21 1988.03 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
89. rpl30 ENSDARG00000035871, ENSDARG00000109253 265.21 1988.03 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
90. rpl7 ENSDARG00000007320 265.21 1988.03 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
91. rpl8 ENSDARG00000014867 265.21 1988.03 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
92. rps14 ENSDARG00000036629 265.21 1988.03 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
93. rps23 ENSDARG00000021838 265.21 1988.03 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
94. rps6 ENSDARG00000019778 265.21 1988.03 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
95. rps9 ENSDARG00000011405, ENSDARG00000113248 265.21 1988.03 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
96. rpsa ENSDARG00000019181 265.21 1988.03 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
97. sepp1a 265.21 1988.03 selenoprotein P, plasma, 1a
98. si:ch1073-429i10.3 265.21 1988.03 si:ch1073-429i10.3, transcript variant X2
99. spna2 265.21 1988.03 spectrin alpha 2, transcript variant X12
100. tob1b ENSDARG00000021372 265.21 1988.03 transducer of ERBB2, 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2151]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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