Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk1, section s22.

Sample reads: 133,410. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 25374.54 190199.00
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5940.48 44527.84 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoa1b ENSDARG00000101324 2477.50 18570.51 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
4. apoeb ENSDARG00000040295 2432.70 18234.70 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
5. zgc:161979 zgc:161979 2429.26 18208.91
6. tmsb4x ENSDARG00000077777 2163.93 16220.09 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. apoc1l apoc1l 2115.69 15858.50
8. zgc:161979_1 zgc:161979_1 2105.36 15781.07
9. apoa2 ENSDARG00000015866 2101.91 15755.21 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
10. apobb apobb 2036.44 15264.47
11. actb2 ENSDARG00000037870 1443.77 10822.01 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
12. apoa1a ENSDARG00000012076, ENSDARG00000110395 1436.88 10770.37 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
13. actb1 ENSDARG00000037746, ENSDARG00000113649 1150.88 8626.61 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
14. fabp2 ENSDARG00000006427, ENSDARG00000110230 857.99 6431.20 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
15. eef1a1l1 ENSDARG00000020850 702.93 5268.93 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. mt-co2 ENSDARG00000063908 620.24 4649.11 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
17. bhmt ENSDARG00000013430 609.90 4571.60 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
18. ctsla ENSDARG00000007836 606.45 4545.74 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
19. mt-nd2 ENSDARG00000063899 596.12 4468.31 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
20. zgc:153129 zgc:153129 568.55 4261.66
21. mt-nd4 ENSDARG00000063917 547.87 4106.65 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
22. fetub ENSDARG00000053973 499.63 3745.06 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
23. rbp4 ENSDARG00000101199 478.96 3590.12 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
24. mt2 ENSDARG00000041623, ENSDARG00000113583 454.84 3409.33 metallothionein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4174]
25. cfl1l ENSDARG00000012972 441.06 3306.04 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
26. ppiaa ENSDARG00000009212 427.27 3202.67 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
27. apoa4 apoa4 389.37 2918.59
28. si:dkey-151g10.6 si:dkey-151g10.6 389.37 2918.59
29. si:dkey-150i13.2 ENSDARG00000071052 385.92 2892.73 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
30. mt-atp6 ENSDARG00000063911 375.59 2815.30 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
31. mt-co3 ENSDARG00000063912 368.70 2763.65 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
32. hmga1a ENSDARG00000028335 344.58 2582.86 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
33. zgc:92533 zgc:92533 317.01 2376.20
34. gamt ENSDARG00000070844, ENSDARG00000109945 306.67 2298.69 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
35. eef2b ENSDARG00000100371, ENSDARG00000109247 299.78 2247.05 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
36. dbi ENSDARG00000026369 282.55 2117.90 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) [Source:ZFIN;Acc:ZDB-GENE-040426-1861]
37. rpl23 ENSDARG00000053457 279.11 2092.11 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
38. APOB APOB 275.66 2066.25
39. sepp1a 275.66 2066.25 selenoprotein P, plasma, 1a
40. pfn1 ENSDARG00000088091 268.77 2014.61 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
41. hspa8 ENSDARG00000068992, ENSDARG00000114726 265.32 1988.75 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
42. tfa ENSDARG00000016771 261.88 1962.96 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
43. apoc2 ENSDARG00000092155 258.43 1937.10 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
44. mt-nd1 ENSDARG00000063895 251.54 1885.46 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
45. pvalb9 ENSDARG00000071601, ENSDARG00000113946 251.54 1885.46 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
46. gatm ENSDARG00000036239 244.65 1833.81 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
47. rpl10a ENSDARG00000042905, ENSDARG00000115649 241.20 1807.95 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
48. rpl8 ENSDARG00000014867 241.20 1807.95 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
49. prdx5 ENSDARG00000055064 237.76 1782.17 peroxiredoxin 5 [Source:ZFIN;Acc:ZDB-GENE-050522-159]
50. cyt1l ENSDARG00000036832 227.42 1704.66 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
51. rpl18a ENSDARG00000025073 227.42 1704.66 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
52. AC024175.17 AC024175.17 223.97 1678.80
53. rpl27 ENSDARG00000015128 223.97 1678.80 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
54. rpl18 ENSDARG00000029533 210.19 1575.51 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
55. rpl26 ENSDARG00000102317 206.75 1549.73 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
56. slc43a2b ENSDARG00000061120, ENSDARG00000117188 206.75 1549.73 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
57. apoea ENSDARG00000102004 203.30 1523.87 apolipoprotein Ea [Source:ZFIN;Acc:ZDB-GENE-010724-18]
58. mt-cyb ENSDARG00000063924 203.30 1523.87 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
59. rps14 ENSDARG00000036629 199.85 1498.01 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
60. rps23 ENSDARG00000021838 199.85 1498.01 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
61. zgc:112425 zgc:112425 196.41 1472.22
62. ldhba ENSDARG00000019644 192.96 1446.36 lactate dehydrogenase Ba [Source:ZFIN;Acc:ZDB-GENE-991026-6]
63. APOA4 APOA4 189.52 1420.58
64. ptmab ENSDARG00000101766 189.52 1420.58 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
65. atp6v1g1 ENSDARG00000022315, ENSDARG00000110951 182.62 1368.86 ATPase H+ transporting V1 subunit G1 [Source:ZFIN;Acc:ZDB-GENE-030131-6965]
66. psap ENSDARG00000013968 182.62 1368.86 prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]
67. rps9 ENSDARG00000011405, ENSDARG00000113248 182.62 1368.86 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
68. mthfd1l ENSDARG00000042221, ENSDARG00000110473 179.18 1343.07 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like [Source:ZFIN;Acc:ZDB-GENE-041001-133]
69. rpl9 ENSDARG00000037350, ENSDARG00000112384 179.18 1343.07 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
70. rps2 ENSDARG00000077291 179.18 1343.07 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
71. zgc:153867 179.18 1343.07 zgc:153867, transcript variant X2
72. aldob ENSDARG00000053684 175.73 1317.21 aldolase b, fructose-bisphosphate [Source:ZFIN;Acc:ZDB-GENE-030131-383]
73. btf3 ENSDARG00000035400, ENSDARG00000116462 175.73 1317.21 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
74. hsp90ab1 ENSDARG00000029150 175.73 1317.21 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
75. krt8 ENSDARG00000058358, ENSDARG00000109279 175.73 1317.21 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
76. rpl19 ENSDARG00000013307 175.73 1317.21 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
77. npc2 ENSDARG00000090912 172.29 1291.43 Niemann-Pick disease, type C2 [Source:ZFIN;Acc:ZDB-GENE-021206-13]
78. pabpc1a ENSDARG00000017219 172.29 1291.43 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
79. myl6 ENSDARG00000008494, ENSDARG00000115496 168.84 1265.57 myosin, light chain 6, alkali, smooth muscle and non-muscle [Source:ZFIN;Acc:ZDB-GENE-041010-28]
80. rpl36 ENSDARG00000100588 165.40 1239.78 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
81. rpl11 ENSDARG00000043509 161.95 1213.92 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
82. rpl21 ENSDARG00000010516, ENSDARG00000110263 161.95 1213.92 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
83. rps27a ENSDARG00000032725, ENSDARG00000114059 158.50 1188.06 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
84. zgc:152830 ENSDARG00000079932 158.50 1188.06 zgc:152830 [Source:ZFIN;Acc:ZDB-GENE-090312-55]
85. capns1b ENSDARG00000013804 155.06 1162.28 calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
86. rpl7 ENSDARG00000007320 155.06 1162.28 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
87. AL954137.2 ENSDARG00000114408 151.61 1136.42
88. eif5a ENSDARG00000017235 151.61 1136.42 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
89. rps26l ENSDARG00000030408 151.61 1136.42 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
90. ctsba ENSDARG00000055120 148.17 1110.63 cathepsin Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2650]
91. rps15 ENSDARG00000070849, ENSDARG00000110979 148.17 1110.63 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
92. ssr2 ENSDARG00000005230 148.17 1110.63 signal sequence receptor, beta [Source:ZFIN;Acc:ZDB-GENE-010413-1]
93. btg1 ENSDARG00000027249 144.72 1084.77 B-cell translocation gene 1, anti-proliferative [Source:ZFIN;Acc:ZDB-GENE-010726-1]
94. rpl36a ENSDARG00000058105, ENSDARG00000112656 144.72 1084.77 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
95. si:dkeyp-86f7.3 si:dkeyp-86f7.3 144.72 1084.77
96. id1 ENSDARG00000040764 137.83 1033.13 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
97. rps5 ENSDARG00000043453 134.38 1007.27 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
98. myh9a ENSDARG00000063295 130.94 981.48 myosin, heavy chain 9a, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-5870]
99. nt5c3a ENSDARG00000058597 130.94 981.48 5'-nucleotidase, cytosolic IIIA [Source:ZFIN;Acc:ZDB-GENE-030131-439]
100. rps19 ENSDARG00000030602 130.94 981.48 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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