Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk1, section s15.

Sample reads: 133,411. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 33381.59 250215.57
2. krt4 ENSDARG00000017624, ENSDARG00000115790 1954.49 14650.11 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1462.10 10959.34 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. mt-co2 ENSDARG00000063908 1199.11 8988.07 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. tpma ENSDARG00000033683 1162.04 8710.21 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
6. mt-nd4 ENSDARG00000063917 1120.33 8397.56 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
7. ckmb ENSDARG00000040565 981.30 7355.45 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
8. tmsb4x ENSDARG00000077777 853.86 6400.21 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
9. mt-nd1 ENSDARG00000063895 833.00 6243.85 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
10. apoa1b ENSDARG00000101324 829.53 6217.84 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
11. mt-co3 ENSDARG00000063912 809.83 6070.17 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
12. mt-atp6 ENSDARG00000063911 787.82 5905.20 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. apoc1l apoc1l 785.50 5887.81
14. eef1a1l1 ENSDARG00000020850 761.17 5705.44 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
15. apobb apobb 755.38 5662.04
16. actb2 ENSDARG00000037870 702.09 5262.60 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
17. zgc:161979 zgc:161979 684.71 5132.32
18. zgc:161979_1 zgc:161979_1 678.92 5088.92
19. ckma ENSDARG00000035327, ENSDARG00000114671 651.11 4880.47 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
20. actc1b ENSDARG00000099197 639.53 4793.67 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
21. apoa2 ENSDARG00000015866 624.46 4680.71 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
22. apoeb ENSDARG00000040295 622.15 4663.40 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
23. atp2a1 ENSDARG00000020574 587.39 4402.85 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
24. si:dkey-150i13.2 ENSDARG00000071052 551.47 4133.61 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
25. si:dkey-151g10.6 si:dkey-151g10.6 531.78 3986.02
26. mt-cyb ENSDARG00000063924 510.92 3829.66 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
27. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 462.27 3465.00 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
28. ppiaa ENSDARG00000009212 455.31 3412.83 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
29. eef2b ENSDARG00000100371, ENSDARG00000109247 443.73 3326.03 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
30. hspa8 ENSDARG00000068992, ENSDARG00000114726 413.61 3100.26 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
31. mylz3 ENSDARG00000017441 413.61 3100.26 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
32. actb1 ENSDARG00000037746, ENSDARG00000113649 399.70 2996.00 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
33. apoa1a ENSDARG00000012076, ENSDARG00000110395 390.43 2926.51 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
34. rpl26 ENSDARG00000102317 360.31 2700.75 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
35. zgc:66286 zgc:66286 356.84 2674.74
36. zgc:112425 zgc:112425 352.20 2639.96
37. rpl10a ENSDARG00000042905, ENSDARG00000115649 344.09 2579.17 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
38. myhz1.3 ENSDARG00000067997 334.82 2509.68 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
39. rpl8 ENSDARG00000014867 327.87 2457.59 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
40. mt-co1 ENSDARG00000063905 311.65 2336.01 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
41. btf3 ENSDARG00000035400, ENSDARG00000116462 310.49 2327.31 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
42. tnnc2 ENSDARG00000070835, ENSDARG00000111155 301.23 2257.90 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
43. rpl18a ENSDARG00000025073 300.07 2249.21 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
44. rpl21 ENSDARG00000010516, ENSDARG00000110263 295.43 2214.43 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
45. rps14 ENSDARG00000036629 279.21 2092.85 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
46. hmga1a ENSDARG00000028335 269.94 2023.37 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
47. rpl9 ENSDARG00000037350, ENSDARG00000112384 267.63 2006.05 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
48. rpl36a ENSDARG00000058105, ENSDARG00000112656 265.31 1988.66 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
49. rps23 ENSDARG00000021838 264.15 1979.97 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
50. myl10 ENSDARG00000062592 256.04 1919.18 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
51. ttna ttna 254.88 1910.48
52. rps27a ENSDARG00000032725, ENSDARG00000114059 252.57 1893.17 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
53. bhmt ENSDARG00000013430 251.41 1884.47 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
54. ttnb ttnb 245.61 1841.00
55. fabp3 ENSDARG00000023290 243.30 1823.68 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
56. acta1b ENSDARG00000055618 240.98 1806.29 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
57. rps26l ENSDARG00000030408 231.71 1736.81 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
58. rps2 ENSDARG00000077291 228.24 1710.80 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
59. rpl11 ENSDARG00000043509 225.92 1693.41 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
60. zgc:153129 zgc:153129 223.60 1676.02
61. myl1 ENSDARG00000014196 222.44 1667.32 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
62. aldoab ENSDARG00000034470 220.13 1650.01 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
63. ctsla ENSDARG00000007836 220.13 1650.01 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
64. eif5a ENSDARG00000017235 217.81 1632.62 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
65. rps9 ENSDARG00000011405, ENSDARG00000113248 214.33 1606.54 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
66. atp1b1a ENSDARG00000013144 212.02 1589.22 ATPase Na+/K+ transporting subunit beta 1a [Source:ZFIN;Acc:ZDB-GENE-001127-3]
67. pvalb2 ENSDARG00000002768, ENSDARG00000114085 212.02 1589.22 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
68. rpl27 ENSDARG00000015128 208.54 1563.14 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
69. acta1a ENSDARG00000036371 207.38 1554.44 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
70. rpl19 ENSDARG00000013307 201.59 1511.04 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
71. tpm3 ENSDARG00000005162 201.59 1511.04 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
72. ATP5B 200.43 1502.35 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
73. hsp90aa1.1 ENSDARG00000010478 198.11 1484.96 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
74. rpl36 ENSDARG00000100588 198.11 1484.96 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
75. rplp1 ENSDARG00000021864 198.11 1484.96 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
76. myhz2 ENSDARG00000012944 188.85 1415.55 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
77. fetub ENSDARG00000053973 187.69 1406.85 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
78. fabp2 ENSDARG00000006427, ENSDARG00000110230 184.21 1380.77 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
79. h1f0 ENSDARG00000038559 178.42 1337.37 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
80. tnni2b.1 ENSDARG00000035958 177.26 1328.67 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
81. rps12 ENSDARG00000036875, ENSDARG00000115157 174.94 1311.28 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
82. tnnt3a ENSDARG00000030270 174.94 1311.28 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
83. hsp90ab1 ENSDARG00000029150 170.31 1276.58 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
84. atp5a1 169.15 1267.88 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
85. rpl18 ENSDARG00000029533 167.99 1259.19 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
86. rpl23 ENSDARG00000053457 167.99 1259.19 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
87. rps20 ENSDARG00000036044 167.99 1259.19 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
88. pabpc1a ENSDARG00000017219 163.36 1224.48 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
89. rbfox1l ENSDARG00000021184, ENSDARG00000111700 162.20 1215.79 RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
90. rpsa ENSDARG00000019181 162.20 1215.79 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
91. rps15a ENSDARG00000010160 161.04 1207.09 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
92. faua ENSDARG00000099022 159.88 1198.40 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
93. rpl7 ENSDARG00000007320 158.72 1189.70 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
94. rps6 ENSDARG00000019778 158.72 1189.70 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
95. mt-nd3 ENSDARG00000063914 155.25 1163.69 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
96. rpl15 ENSDARG00000009285 155.25 1163.69 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
97. mt2 ENSDARG00000041623, ENSDARG00000113583 154.09 1155.00 metallothionein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4174]
98. si:dkeyp-86f7.3 si:dkeyp-86f7.3 154.09 1155.00
99. ptmab ENSDARG00000101766 152.93 1146.30 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
100. smyhc1 ENSDARG00000099959, ENSDARG00000115916 152.93 1146.30 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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