Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk1, section s14.

Sample reads: 133,412. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 35364.36 265075.33
2. tpma ENSDARG00000033683 1606.34 12040.40 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. mt-nd2 ENSDARG00000063899 1392.80 10439.80 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 1386.24 10390.63 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. ckmb ENSDARG00000040565 1142.81 8565.99 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mt-co2 ENSDARG00000063908 1110.74 8325.61 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. mt-atp6 ENSDARG00000063911 1072.11 8036.05 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. mt-nd4 ENSDARG00000063917 1003.60 7522.53 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. mt-co3 ENSDARG00000063912 946.75 7096.41 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
10. mt-nd1 ENSDARG00000063895 841.07 6304.28 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
11. apoc1l apoc1l 789.32 5916.39
12. ckma ENSDARG00000035327, ENSDARG00000114671 682.92 5118.86 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
13. apobb apobb 680.73 5102.45
14. apoa1b ENSDARG00000101324 659.59 4943.99 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
15. eef1a1l1 ENSDARG00000020850 646.47 4845.65 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. apoa2 ENSDARG00000015866 605.66 4539.75 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
17. tmsb4x ENSDARG00000077777 599.10 4490.58 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
18. zgc:161979 zgc:161979 594.00 4452.36
19. apoeb ENSDARG00000040295 581.61 4359.49 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
20. atp2a1 ENSDARG00000020574 568.49 4261.15 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
21. actb2 ENSDARG00000037870 550.27 4124.58 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
22. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 545.89 4091.75 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
23. actc1b ENSDARG00000099197 544.44 4080.88 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
24. si:dkey-150i13.2 ENSDARG00000071052 515.28 3862.31 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
25. zgc:161979_1 zgc:161979_1 505.08 3785.85
26. ppiaa ENSDARG00000009212 504.35 3780.38 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
27. si:dkey-151g10.6 si:dkey-151g10.6 500.71 3753.10
28. mylz3 ENSDARG00000017441 486.13 3643.81 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
29. mt-cyb ENSDARG00000063924 462.08 3463.54 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
30. myhz1.3 ENSDARG00000067997 446.77 3348.79 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
31. hspa8 ENSDARG00000068992, ENSDARG00000114726 396.48 2971.84 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
32. tnnc2 ENSDARG00000070835, ENSDARG00000111155 396.48 2971.84 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
33. apoa1a ENSDARG00000012076, ENSDARG00000110395 392.84 2944.55 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
34. actb1 ENSDARG00000037746, ENSDARG00000113649 392.11 2939.08 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
35. rpl10a ENSDARG00000042905, ENSDARG00000115649 373.89 2802.51 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
36. rpl8 ENSDARG00000014867 362.23 2715.11 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
37. rpl26 ENSDARG00000102317 349.84 2622.24 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
38. rpl23 ENSDARG00000053457 343.28 2573.07 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
39. btf3 ENSDARG00000035400, ENSDARG00000116462 334.53 2507.49 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
40. rpl18a ENSDARG00000025073 332.35 2491.15 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
41. rpl21 ENSDARG00000010516, ENSDARG00000110263 330.16 2474.73 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
42. eef2b ENSDARG00000100371, ENSDARG00000109247 324.33 2431.03 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
43. hmga1a ENSDARG00000028335 317.04 2376.39 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
44. rpl36a ENSDARG00000058105, ENSDARG00000112656 316.31 2370.92 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
45. zgc:112425 zgc:112425 308.30 2310.88
46. acta1b ENSDARG00000055618 289.35 2168.84 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
47. ttna ttna 283.52 2125.14
48. pvalb2 ENSDARG00000002768, ENSDARG00000114085 282.79 2119.67 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
49. rps27a ENSDARG00000032725, ENSDARG00000114059 278.41 2086.84 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
50. rps14 ENSDARG00000036629 269.67 2021.32 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
51. tnni2b.1 ENSDARG00000035958 265.29 1988.49 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
52. fabp3 ENSDARG00000023290 264.57 1983.10 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
53. mt-co1 ENSDARG00000063905 263.11 1972.15 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
54. rpl9 ENSDARG00000037350, ENSDARG00000112384 258.74 1939.40 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
55. rpl27 ENSDARG00000015128 252.90 1895.62 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
56. hsp90aa1.1 ENSDARG00000010478 243.43 1824.64 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
57. ttnb ttnb 243.43 1824.64
58. rps23 ENSDARG00000021838 241.24 1808.23 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
59. zgc:66286 zgc:66286 240.51 1802.75
60. acta1a ENSDARG00000036371 232.50 1742.72 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
61. rpl11 ENSDARG00000043509 231.77 1737.24 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
62. rps9 ENSDARG00000011405, ENSDARG00000113248 229.58 1720.83 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
63. ATP5B 228.12 1709.88 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
64. myl10 ENSDARG00000062592 226.67 1699.02 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
65. rpl7 ENSDARG00000007320 223.75 1677.13 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
66. atp1b1a ENSDARG00000013144 220.11 1649.85 ATPase Na+/K+ transporting subunit beta 1a [Source:ZFIN;Acc:ZDB-GENE-001127-3]
67. rps26l ENSDARG00000030408 218.65 1638.90 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
68. rpl19 ENSDARG00000013307 215.01 1611.62 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
69. myl1 ENSDARG00000014196 212.82 1595.20 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
70. myhz2 ENSDARG00000012944 211.36 1584.26 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
71. bhmt ENSDARG00000013430 210.63 1578.79 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
72. eif5a ENSDARG00000017235 209.17 1567.84 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
73. ctsla ENSDARG00000007836 205.53 1540.56 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
74. rplp1 ENSDARG00000021864 202.62 1518.75 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
75. aldoab ENSDARG00000034470 201.89 1513.28 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
76. fabp2 ENSDARG00000006427, ENSDARG00000110230 201.16 1507.80 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
77. rpl18 ENSDARG00000029533 198.97 1491.39 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
78. rpl36 ENSDARG00000100588 197.51 1480.45 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
79. rps2 ENSDARG00000077291 188.77 1414.93 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
80. tnnt3a ENSDARG00000030270 188.04 1409.46 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
81. rps6 ENSDARG00000019778 182.21 1365.76 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
82. rpl6 ENSDARG00000058451 180.75 1354.82 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
83. zgc:153129 zgc:153129 177.83 1332.93
84. rpl5b ENSDARG00000015862, ENSDARG00000109661 174.19 1305.65 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
85. AC024175.17 AC024175.17 173.46 1300.18
86. rps15 ENSDARG00000070849, ENSDARG00000110979 170.55 1278.37 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
87. rpl15 ENSDARG00000009285 168.36 1261.95 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
88. rps4x ENSDARG00000014690 166.17 1245.54 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
89. tnni2a.4 ENSDARG00000029069 163.26 1223.72 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
90. hsp90ab1 ENSDARG00000029150 162.53 1218.25 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
91. mt2 ENSDARG00000041623, ENSDARG00000113583 162.53 1218.25 metallothionein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4174]
92. faua ENSDARG00000099022 161.07 1207.31 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
93. rps19 ENSDARG00000030602 161.07 1207.31 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
94. rps20 ENSDARG00000036044 161.07 1207.31 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
95. atp5g3b 160.34 1201.84 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
96. h1f0 ENSDARG00000038559 160.34 1201.84 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
97. rps5 ENSDARG00000043453 158.16 1185.50 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
98. rbfox1l ENSDARG00000021184, ENSDARG00000111700 156.70 1174.55 RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
99. rps27.1 ENSDARG00000023298 153.78 1152.67 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
100. slc43a2b ENSDARG00000061120, ENSDARG00000117188 153.78 1152.67 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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