Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk1, section s1.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 21502.48 161172.13
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3347.78 25093.33 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1417.48 10624.74 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. mt-nd2 ENSDARG00000063899 1188.00 8904.67 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. actb2 ENSDARG00000037870 1125.04 8432.75 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. mt-co2 ENSDARG00000063908 1091.90 8184.35 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. tpma ENSDARG00000033683 973.43 7296.36 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
8. mt-co3 ENSDARG00000063912 881.47 6607.07 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. ckmb ENSDARG00000040565 770.46 5774.99 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
10. eef1a1l1 ENSDARG00000020850 759.69 5694.27 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
11. mt-atp6 ENSDARG00000063911 755.55 5663.24 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. actb1 ENSDARG00000037746, ENSDARG00000113649 732.35 5489.34 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
13. hmga1a ENSDARG00000028335 713.30 5346.55 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
14. mt-nd4 ENSDARG00000063917 709.16 5315.52 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. si:dkey-151g10.6 si:dkey-151g10.6 693.41 5197.46
16. zgc:112425 zgc:112425 690.10 5172.65
17. hspa8 ENSDARG00000068992, ENSDARG00000114726 584.06 4377.83 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
18. mt-nd1 ENSDARG00000063895 544.29 4079.73 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
19. eef2b ENSDARG00000100371, ENSDARG00000109247 521.93 3912.13 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
20. rpl10a ENSDARG00000042905, ENSDARG00000115649 495.41 3713.35 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
21. ppiaa ENSDARG00000009212 491.27 3682.32 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
22. rpl23 ENSDARG00000053457 467.25 3502.28 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
23. ckma ENSDARG00000035327, ENSDARG00000114671 455.65 3415.33 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
24. mylz3 ENSDARG00000017441 449.02 3365.64 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
25. rpl18a ENSDARG00000025073 419.20 3142.12 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
26. actc1b ENSDARG00000099197 418.37 3135.90 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
27. fabp3 ENSDARG00000023290 398.49 2986.89 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
28. gch2 ENSDARG00000099101 398.49 2986.89 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
29. rpl26 ENSDARG00000102317 398.49 2986.89 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
30. myhz1.3 ENSDARG00000067997 367.83 2757.07 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
31. rpl36a ENSDARG00000058105, ENSDARG00000112656 362.03 2713.60 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
32. btf3 ENSDARG00000035400, ENSDARG00000116462 354.58 2657.76 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
33. mt-cyb ENSDARG00000063924 352.09 2639.10 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
34. rps23 ENSDARG00000021838 347.12 2601.84 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
35. AC024175.17 AC024175.17 346.29 2595.62
36. rpl21 ENSDARG00000010516, ENSDARG00000110263 345.46 2589.40 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
37. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 342.98 2570.81 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
38. ptmab ENSDARG00000101766 342.98 2570.81 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
39. atp2a1 ENSDARG00000020574 340.49 2552.15 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
40. rpl8 ENSDARG00000014867 337.18 2527.34 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
41. zgc:66286 zgc:66286 326.41 2446.61
42. hsp90ab1 ENSDARG00000029150 310.67 2328.63 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
43. rps27a ENSDARG00000032725, ENSDARG00000114059 306.53 2297.60 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
44. tnnc2 ENSDARG00000070835, ENSDARG00000111155 304.04 2278.94 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
45. rpl9 ENSDARG00000037350, ENSDARG00000112384 295.76 2216.87 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
46. rps14 ENSDARG00000036629 294.93 2210.65 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
47. rps15 ENSDARG00000070849, ENSDARG00000110979 290.79 2179.62 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
48. rpl19 ENSDARG00000013307 287.47 2154.74 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
49. col1a1a ENSDARG00000012405, ENSDARG00000116113 279.19 2092.67 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
50. rpl36 ENSDARG00000100588 275.87 2067.79 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
51. zgc:123194 zgc:123194 265.10 1987.06
52. cfl1l ENSDARG00000012972 263.45 1974.69 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
53. rplp1 ENSDARG00000021864 260.96 1956.03 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
54. acta1b ENSDARG00000055618 258.48 1937.44 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
55. acta1a ENSDARG00000036371 253.51 1900.19 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
56. ttnb ttnb 252.68 1893.97
57. rpl27 ENSDARG00000015128 248.54 1862.93 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
58. rpl11 ENSDARG00000043509 241.91 1813.24 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
59. si:dkeyp-86f7.3 si:dkeyp-86f7.3 240.25 1800.80
60. ttna ttna 240.25 1800.80
61. id1 ENSDARG00000040764 236.94 1775.99 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
62. rps26l ENSDARG00000030408 236.94 1775.99 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
63. myl10 ENSDARG00000062592 233.62 1751.10 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
64. AL954137.2 ENSDARG00000114408 230.31 1726.29
65. zgc:92533 zgc:92533 227.00 1701.48
66. pcna ENSDARG00000054155 226.17 1695.26 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
67. rpl7 ENSDARG00000007320 224.51 1682.82 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
68. rps6 ENSDARG00000019778 222.03 1664.23 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
69. mt-co1 ENSDARG00000063905 217.88 1633.12 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
70. rps27.1 ENSDARG00000023298 217.05 1626.90 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
71. rps9 ENSDARG00000011405, ENSDARG00000113248 212.08 1589.65 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
72. rps2 ENSDARG00000077291 210.43 1577.28 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
73. rpl18 ENSDARG00000029533 207.94 1558.62 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
74. col1a1b ENSDARG00000035809 206.28 1546.17 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
75. rps4x ENSDARG00000014690 206.28 1546.17 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
76. pvalb2 ENSDARG00000002768, ENSDARG00000114085 205.46 1540.03 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
77. RPL29 ENSDARG00000077717 202.14 1515.14 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
78. pfn1 ENSDARG00000088091 202.14 1515.14 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
79. rps20 ENSDARG00000036044 198.00 1484.11 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
80. eif5a ENSDARG00000017235 197.17 1477.89 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
81. hmgn2 ENSDARG00000099572 196.34 1471.67 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
82. rps15a ENSDARG00000010160 196.34 1471.67 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
83. rps5 ENSDARG00000043453 195.51 1465.45 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
84. rps12 ENSDARG00000036875, ENSDARG00000115157 194.69 1459.30 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
85. rpl5b ENSDARG00000015862, ENSDARG00000109661 191.37 1434.42 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
86. tnni2b.1 ENSDARG00000035958 189.72 1422.05 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
87. rps24 ENSDARG00000039347 188.06 1409.61 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
88. rpl15 ENSDARG00000009285 187.23 1403.39 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
89. tpm3 ENSDARG00000005162 185.57 1390.94 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
90. rpsa ENSDARG00000019181 184.74 1384.72 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
91. tnnt3a ENSDARG00000030270 184.74 1384.72 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
92. cirbp cirbp 181.43 1359.91
93. si:dkey-150i13.2 ENSDARG00000071052 180.60 1353.69 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
94. hsp90aa1.1 ENSDARG00000010478 177.29 1328.88 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
95. rpl14 ENSDARG00000103433 175.63 1316.44 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
96. rps10 ENSDARG00000034897 175.63 1316.44 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
97. rplp0 ENSDARG00000051783 173.98 1304.07 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
98. rps29 ENSDARG00000041232 171.49 1285.41 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
99. cfl1 ENSDARG00000021124 170.66 1279.18 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
100. ATP5B 169.00 1266.74 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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