Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s76.

Sample reads: 96,251. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3868.32 40190.00 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd4 ENSMUSG00000064363 2715.51 28212.86 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
3. mt-Co2 ENSMUSG00000064354 2536.18 26349.70 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
4. mt-Nd1 ENSMUSG00000064341 2472.14 25684.36 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Atp6 ENSMUSG00000064357 2305.62 23954.29 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. Ptma ENSMUSG00000026238 2100.68 21825.07 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Nd3 ENSMUSG00000064360 1421.80 14771.83 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
8. mt-Rnr2 ENSMUSG00000064339 1383.37 14372.56 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. H19 ENSMUSG00000000031 1319.33 13707.21 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. mt-Co1 ENSMUSG00000064351 1191.24 12376.42 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd2 ENSMUSG00000064345 1101.58 11444.89 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. mt-Co3 ENSMUSG00000064358 871.01 9049.38 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Actb ENSMUSG00000029580 858.20 8916.29 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Igf2 ENSMUSG00000048583 653.26 6787.06 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Gm13340 ENSMUSG00000083563 422.70 4391.65 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
16. Hmga2 ENSMUSG00000056758 422.70 4391.65 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. Eef1a1 ENSMUSG00000037742 397.08 4125.47 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Gm10800 ENSMUSG00000075014 397.08 4125.47 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
19. Mdk ENSMUSG00000027239 397.08 4125.47 midkine [Source:MGI Symbol;Acc:MGI:96949]
20. mt-Nd5 ENSMUSG00000064367 397.08 4125.47 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. Npm1 ENSMUSG00000057113 333.03 3460.02 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Tubb5 ENSMUSG00000001525 333.03 3460.02 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Tuba1b ENSMUSG00000023004 320.23 3327.04 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Cfl1 ENSMUSG00000056201 281.80 2927.77 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Fkbp1a ENSMUSG00000032966 268.99 2794.68 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
26. Myl6 ENSMUSG00000090841 256.18 2661.59 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
27. Col3a1 ENSMUSG00000026043 243.37 2528.50 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
28. Tmsb4x ENSMUSG00000049775 243.37 2528.50 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
29. Acta2 ENSMUSG00000035783 230.56 2395.41 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
30. Rps20 ENSMUSG00000028234 230.56 2395.41 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
31. Rpsa ENSMUSG00000032518 230.56 2395.41 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
32. Ywhab ENSMUSG00000018326 230.56 2395.41 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
33. Eif5a ENSMUSG00000078812 217.75 2262.32 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
34. Nedd4 ENSMUSG00000032216 217.75 2262.32 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
35. Rps26 ENSMUSG00000025362 217.75 2262.32 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
36. Tpt1 ENSMUSG00000060126 217.75 2262.32 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
37. Tpm1 ENSMUSG00000032366 192.14 1996.24 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
38. Cdk4 ENSMUSG00000006728 179.33 1863.15 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
39. Col1a1 ENSMUSG00000001506 179.33 1863.15 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
40. Eif4g2 ENSMUSG00000005610 179.33 1863.15 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
41. Grb10 ENSMUSG00000020176 179.33 1863.15 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
42. Ngfrap1 166.52 1730.06 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
43. Rpl4 ENSMUSG00000032399 166.52 1730.06 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
44. Wbp5 166.52 1730.06 WW domain binding protein 5
45. Atp5g3 ENSMUSG00000018770 153.71 1596.97 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
46. Kpnb1 ENSMUSG00000001440 153.71 1596.97 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
47. Rplp1 ENSMUSG00000007892 153.71 1596.97 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
48. Chchd2 ENSMUSG00000070493 140.90 1463.88 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
49. Cltc ENSMUSG00000047126 140.90 1463.88 clathrin, heavy polypeptide (Hc) [Source:MGI Symbol;Acc:MGI:2388633]
50. Eef1b2 ENSMUSG00000025967 140.90 1463.88 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
51. Gm5805 ENSMUSG00000061848 140.90 1463.88 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
52. Hsp90ab1 ENSMUSG00000023944 140.90 1463.88 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
53. Meg3 ENSMUSG00000021268 140.90 1463.88 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
54. Pdia6 ENSMUSG00000020571 140.90 1463.88 protein disulfide isomerase associated 6 [Source:MGI Symbol;Acc:MGI:1919103]
55. Peg3 ENSMUSG00000002265 140.90 1463.88 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
56. Atp5a1 ENSMUSG00000025428, ENSMUSG00000116276 128.09 1330.79 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 [Source:MGI Symbol;Acc:MGI:88115]
57. Banf1 ENSMUSG00000024844 128.09 1330.79 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
58. Lamp1 ENSMUSG00000031447 128.09 1330.79 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
59. Paics ENSMUSG00000029247 128.09 1330.79 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
60. Pkm ENSMUSG00000032294 128.09 1330.79 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
61. Rrm2 ENSMUSG00000020649 128.09 1330.79 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
62. Serpinh1 ENSMUSG00000070436 128.09 1330.79 serine (or cysteine) peptidase inhibitor, clade H, member 1 [Source:MGI Symbol;Acc:MGI:88283]
63. Ybx1 ENSMUSG00000028639 128.09 1330.79 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
64. Bcap31 ENSMUSG00000002015 115.28 1197.70 B cell receptor associated protein 31 [Source:MGI Symbol;Acc:MGI:1350933]
65. Gm14303 ENSMUSG00000081344 115.28 1197.70 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
66. Hmgn1 ENSMUSG00000040681 115.28 1197.70 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
67. Hnrnpc ENSMUSG00000060373 115.28 1197.70 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
68. Hspe1 ENSMUSG00000073676 115.28 1197.70 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
69. Morf4l1 ENSMUSG00000062270 115.28 1197.70 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
70. Pabpc1 ENSMUSG00000022283 115.28 1197.70 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
71. Pbx1 ENSMUSG00000052534 115.28 1197.70 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
72. Plagl1 ENSMUSG00000019817 115.28 1197.70 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
73. Set ENSMUSG00000054766 115.28 1197.70 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
74. Srsf3 ENSMUSG00000071172 115.28 1197.70 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
75. Tmsb10 ENSMUSG00000079523 115.28 1197.70 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
76. Ubb ENSMUSG00000019505 115.28 1197.70 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
77. mt-Rnr1 ENSMUSG00000064337 115.28 1197.70 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
78. Eef2 ENSMUSG00000034994 102.47 1064.61 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
79. Gm15459 ENSMUSG00000100801 102.47 1064.61 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
80. Gnas ENSMUSG00000027523 102.47 1064.61 GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus [Source:MGI Symbol;Acc:MGI:95777]
81. Hnrnpdl ENSMUSG00000029328 102.47 1064.61 heterogeneous nuclear ribonucleoprotein D-like [Source:MGI Symbol;Acc:MGI:1355299]
82. Hsp90aa1 ENSMUSG00000021270 102.47 1064.61 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
83. Itgb1 ENSMUSG00000025809 102.47 1064.61 integrin beta 1 (fibronectin receptor beta) [Source:MGI Symbol;Acc:MGI:96610]
84. Ndufa12 ENSMUSG00000020022 102.47 1064.61 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
85. Ran ENSMUSG00000029430 102.47 1064.61 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
86. Rpl18a ENSMUSG00000045128 102.47 1064.61 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
87. Rps10-ps1 ENSMUSG00000060438 102.47 1064.61 ribosomal protein S10, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3644167]
88. Son ENSMUSG00000022961 102.47 1064.61 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
89. Ywhaq ENSMUSG00000076432 102.47 1064.61 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
90. 2810417H13Rik 89.66 931.52 RIKEN cDNA 2810417H13 gene
91. Arpc2 ENSMUSG00000006304 89.66 931.52 actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
92. Atp5b ENSMUSG00000025393 89.66 931.52 ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit [Source:MGI Symbol;Acc:MGI:107801]
93. Cand1 ENSMUSG00000020114 89.66 931.52 cullin associated and neddylation disassociated 1 [Source:MGI Symbol;Acc:MGI:1261820]
94. Cdkn1c ENSMUSG00000037664 89.66 931.52 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
95. Cks1b ENSMUSG00000028044 89.66 931.52 CDC28 protein kinase 1b [Source:MGI Symbol;Acc:MGI:1889208]
96. Cox8a ENSMUSG00000035885 89.66 931.52 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
97. Flna ENSMUSG00000031328 89.66 931.52 filamin, alpha [Source:MGI Symbol;Acc:MGI:95556]
98. Gm10073 ENSMUSG00000060019 89.66 931.52 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
99. Hnrnpa2b1 ENSMUSG00000004980 89.66 931.52 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
100. Hnrnpab ENSMUSG00000020358 89.66 931.52 heterogeneous nuclear ribonucleoprotein A/B [Source:MGI Symbol;Acc:MGI:1330294]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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