Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s75.

Sample reads: 96,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 5745.32 59698.39 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd1 ENSMUSG00000064341 3418.21 35517.89 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
3. mt-Co2 ENSMUSG00000064354 3332.97 34632.18 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
4. mt-Nd4 ENSMUSG00000064363 2957.90 30734.91 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Atp6 ENSMUSG00000064357 2812.99 29229.18 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. Ptma ENSMUSG00000026238 1619.60 16828.92 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Nd3 ENSMUSG00000064360 1602.55 16651.75 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
8. mt-Co1 ENSMUSG00000064351 1355.35 14083.15 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Rnr2 ENSMUSG00000064339 1227.49 12754.59 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. mt-Nd2 ENSMUSG00000064345 1176.34 12223.10 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. Actb ENSMUSG00000029580 997.33 10363.04 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. H19 ENSMUSG00000000031 895.04 9300.17 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. mt-Co3 ENSMUSG00000064358 852.42 8857.31 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. Mdk ENSMUSG00000027239 639.32 6643.04 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Eef1a1 ENSMUSG00000037742 579.65 6023.02 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Igf2 ENSMUSG00000048583 511.45 5314.37 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Gm13340 ENSMUSG00000083563 417.69 4340.13 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Gm10800 ENSMUSG00000075014 375.07 3897.27 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
19. Hmga2 ENSMUSG00000056758 340.97 3542.95 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Npm1 ENSMUSG00000057113 332.44 3454.31 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Acta2 ENSMUSG00000035783 255.73 2657.24 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
22. mt-Nd5 ENSMUSG00000064367 247.20 2568.60 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Col1a1 ENSMUSG00000001506 230.15 2391.44 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
24. Col3a1 ENSMUSG00000026043 230.15 2391.44 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
25. Cfl1 ENSMUSG00000056201 221.63 2302.91 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Nedd4 ENSMUSG00000032216 213.11 2214.38 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Rpsa ENSMUSG00000032518 213.11 2214.38 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Banf1 ENSMUSG00000024844 204.58 2125.75 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
29. Eif5a ENSMUSG00000078812 196.06 2037.22 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
30. Tuba1b ENSMUSG00000023004 196.06 2037.22 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
31. Ubb ENSMUSG00000019505 179.01 1860.05 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Eef1b2 ENSMUSG00000025967 170.48 1771.42 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
33. Ngfrap1 170.48 1771.42 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
34. Pkm ENSMUSG00000032294 170.48 1771.42 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
35. Rpl18a ENSMUSG00000045128 170.48 1771.42 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
36. Rpl37 ENSMUSG00000041841 170.48 1771.42 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
37. Grb10 ENSMUSG00000020176 161.96 1682.89 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
38. Tmsb10 ENSMUSG00000079523 153.44 1594.36 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
39. Tmsb4x ENSMUSG00000049775 153.44 1594.36 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
40. Ywhab ENSMUSG00000018326 153.44 1594.36 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
41. Chchd2 ENSMUSG00000070493 144.91 1505.73 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
42. Eif4g2 ENSMUSG00000005610 144.91 1505.73 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
43. Fkbp1a ENSMUSG00000032966 144.91 1505.73 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
44. Hsp90aa1 ENSMUSG00000021270 144.91 1505.73 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
45. Rpl23 ENSMUSG00000071415 144.91 1505.73 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Tpt1 ENSMUSG00000060126 144.91 1505.73 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
47. Trim28 ENSMUSG00000005566 144.91 1505.73 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
48. Gm17132 ENSMUSG00000061331 136.39 1417.20 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
49. Gm26870 ENSMUSG00000097312 136.39 1417.20 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
50. Hsp90ab1 ENSMUSG00000023944 136.39 1417.20 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
51. Rpl4 ENSMUSG00000032399 136.39 1417.20 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
52. Anp32b ENSMUSG00000028333 127.86 1328.57 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
53. Rpl8 ENSMUSG00000003970 127.86 1328.57 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
54. Rps26 ENSMUSG00000025362 127.86 1328.57 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
55. Tpm1 ENSMUSG00000032366 127.86 1328.57 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
56. Tubb5 ENSMUSG00000001525 127.86 1328.57 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
57. mt-Rnr1 ENSMUSG00000064337 127.86 1328.57 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
58. Paics ENSMUSG00000029247 119.34 1240.04 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
59. Rrm2 ENSMUSG00000020649 119.34 1240.04 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
60. Set ENSMUSG00000054766 119.34 1240.04 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
61. Actg1 ENSMUSG00000062825 110.81 1151.40 actin, gamma, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:87906]
62. Calr ENSMUSG00000003814 110.81 1151.40 calreticulin [Source:MGI Symbol;Acc:MGI:88252]
63. Flna ENSMUSG00000031328 110.81 1151.40 filamin, alpha [Source:MGI Symbol;Acc:MGI:95556]
64. Hmgn1 ENSMUSG00000040681 110.81 1151.40 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
65. Hnrnpc ENSMUSG00000060373 110.81 1151.40 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
66. Krtcap2 ENSMUSG00000042747 110.81 1151.40 keratinocyte associated protein 2 [Source:MGI Symbol;Acc:MGI:1913309]
67. Ncl ENSMUSG00000026234 110.81 1151.40 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
68. Pcbp1 ENSMUSG00000051695 110.81 1151.40 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
69. Rps20 ENSMUSG00000028234 110.81 1151.40 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
70. Rps9 ENSMUSG00000006333 110.81 1151.40 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
71. Son ENSMUSG00000022961 110.81 1151.40 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
72. Atp5g3 ENSMUSG00000018770 102.29 1062.87 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
73. Meg3 ENSMUSG00000021268 102.29 1062.87 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
74. Plagl1 ENSMUSG00000019817 102.29 1062.87 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
75. Rpl32 ENSMUSG00000057841 102.29 1062.87 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
76. Rps3a1 ENSMUSG00000028081 102.29 1062.87 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
77. Sfrp1 ENSMUSG00000031548 102.29 1062.87 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
78. Sub1 ENSMUSG00000022205 102.29 1062.87 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
79. Wbp5 102.29 1062.87 WW domain binding protein 5
80. 2810417H13Rik 93.77 974.34 RIKEN cDNA 2810417H13 gene
81. Gm5805 ENSMUSG00000061848 93.77 974.34 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
82. Gnb2l1 Gnb2l1 93.77 974.34
83. Myl6 ENSMUSG00000090841 93.77 974.34 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
84. Ndufa12 ENSMUSG00000020022 93.77 974.34 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
85. Rps19-ps6 ENSMUSG00000096942 93.77 974.34 ribosomal protein S19, pseudogene 6 [Source:MGI Symbol;Acc:MGI:5011818]
86. Rps5 ENSMUSG00000012848 93.77 974.34 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
87. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 93.77 974.34 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
88. Srsf11 ENSMUSG00000055436 93.77 974.34 serine/arginine-rich splicing factor 11 [Source:MGI Symbol;Acc:MGI:1916457]
89. Tecr ENSMUSG00000031708 93.77 974.34 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
90. Ybx1 ENSMUSG00000028639 93.77 974.34 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
91. Ago2 ENSMUSG00000036698 85.24 885.71 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
92. Arf1 ENSMUSG00000048076 85.24 885.71 ADP-ribosylation factor 1 [Source:MGI Symbol;Acc:MGI:99431]
93. Cd24a ENSMUSG00000047139 85.24 885.71 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
94. Cycs ENSMUSG00000063694 85.24 885.71 cytochrome c, somatic [Source:MGI Symbol;Acc:MGI:88578]
95. Dnaja2 ENSMUSG00000031701 85.24 885.71 DnaJ heat shock protein family (Hsp40) member A2 [Source:MGI Symbol;Acc:MGI:1931882]
96. Fkbp4 ENSMUSG00000030357 85.24 885.71 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
97. H3f3b ENSMUSG00000016559 85.24 885.71 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
98. Hnrnpk ENSMUSG00000021546 85.24 885.71 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
99. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 85.24 885.71 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
100. Lamp1 ENSMUSG00000031447 85.24 885.71 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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