Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s72.

Sample reads: 96,255. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4310.04 44777.24 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3411.62 35443.50 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2469.66 25657.43 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2403.70 24972.17 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 2374.68 24670.68 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 2295.52 23848.28 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1325.86 13774.43 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Mdk ENSMUSG00000027239 1026.39 10663.22 midkine [Source:MGI Symbol;Acc:MGI:96949]
9. mt-Nd3 ENSMUSG00000064360 1005.28 10443.91 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. H19 ENSMUSG00000000031 854.88 8881.39 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. Actb ENSMUSG00000029580 852.24 8853.97 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Co3 ENSMUSG00000064358 751.98 7812.36 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. mt-Nd2 ENSMUSG00000064345 682.06 7085.96 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. Eef1a1 ENSMUSG00000037742 667.55 6935.21 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. mt-Rnr2 ENSMUSG00000064339 639.84 6647.33 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
16. Igf2 ENSMUSG00000048583 447.23 4646.30 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Gm13340 ENSMUSG00000083563 369.39 3837.61 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Tuba1b ENSMUSG00000023004 358.84 3728.01 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
19. mt-Nd5 ENSMUSG00000064367 317.94 3303.10 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Rpsa ENSMUSG00000032518 306.07 3179.78 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Gm10800 ENSMUSG00000075014 302.11 3138.64 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
22. Tubb5 ENSMUSG00000001525 290.24 3015.32 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Npm1 ENSMUSG00000057113 288.92 3001.61 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Hmga2 ENSMUSG00000056758 269.13 2796.01 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
25. Ubb ENSMUSG00000019505 246.70 2562.98 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
26. Col3a1 ENSMUSG00000026043 242.74 2521.84 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
27. Tpt1 ENSMUSG00000060126 237.47 2467.09 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Nedd4 ENSMUSG00000032216 234.83 2439.66 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
29. Cfl1 ENSMUSG00000056201 232.19 2412.23 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
30. Pkm ENSMUSG00000032294 209.76 2179.21 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
31. Grb10 ENSMUSG00000020176 182.06 1891.43 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
32. Rpl4 ENSMUSG00000032399 182.06 1891.43 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. Chchd2 ENSMUSG00000070493 171.50 1781.72 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Hsp90ab1 ENSMUSG00000023944 168.87 1754.40 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
35. Myl6 ENSMUSG00000090841 162.27 1685.83 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
36. Sfrp1 ENSMUSG00000031548 153.03 1589.84 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
37. Banf1 ENSMUSG00000024844 150.40 1562.51 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
38. Rpl23 ENSMUSG00000071415 149.08 1548.80 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
39. Eif5a ENSMUSG00000078812 146.44 1521.37 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
40. Hsp90aa1 ENSMUSG00000021270 146.44 1521.37 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
41. Rps20 ENSMUSG00000028234 145.12 1507.66 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
42. Hmgn1 ENSMUSG00000040681 143.80 1493.95 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
43. Eef1b2 ENSMUSG00000025967 141.16 1466.52 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Col1a1 ENSMUSG00000001506 138.52 1439.09 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
45. Rps26 ENSMUSG00000025362 134.56 1397.95 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
46. Eif4g2 ENSMUSG00000005610 133.25 1384.34 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
47. Fkbp1a ENSMUSG00000032966 131.93 1370.63 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
48. Hnrnpc ENSMUSG00000060373 130.61 1356.91 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
49. Rps3a1 ENSMUSG00000028081 129.29 1343.20 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
50. Ran ENSMUSG00000029430 127.97 1329.49 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
51. Rpl18a ENSMUSG00000045128 127.97 1329.49 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
52. Sub1 ENSMUSG00000022205 121.37 1260.92 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
53. Hnrnpa2b1 ENSMUSG00000004980 120.05 1247.21 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
54. Paics ENSMUSG00000029247 117.41 1219.78 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
55. Rplp1 ENSMUSG00000007892 117.41 1219.78 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
56. Meg3 ENSMUSG00000021268 116.10 1206.17 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
57. Atp5g3 ENSMUSG00000018770 114.78 1192.46 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
58. Gm14303 ENSMUSG00000081344 114.78 1192.46 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
59. Pcbp1 ENSMUSG00000051695 114.78 1192.46 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
60. Ywhab ENSMUSG00000018326 114.78 1192.46 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
61. Ngfrap1 113.46 1178.74 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
62. Ago2 ENSMUSG00000036698 112.14 1165.03 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
63. Gm5805 ENSMUSG00000061848 109.50 1137.60 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
64. mt-Rnr1 ENSMUSG00000064337 109.50 1137.60 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
65. Hnrnph1 ENSMUSG00000007850 106.86 1110.17 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
66. Gm17132 ENSMUSG00000061331 105.54 1096.46 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
67. Set ENSMUSG00000054766 105.54 1096.46 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
68. Trim28 ENSMUSG00000005566 102.90 1069.03 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
69. Tsc22d1 ENSMUSG00000022010 101.58 1055.32 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
70. Fkbp4 ENSMUSG00000030357 100.26 1041.61 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
71. Rpl32 ENSMUSG00000057841 97.63 1014.28 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
72. H3f3b ENSMUSG00000016559 96.31 1000.57 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
73. Ybx1 ENSMUSG00000028639 96.31 1000.57 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
74. Kpnb1 ENSMUSG00000001440 91.03 945.72 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
75. Pabpc1 ENSMUSG00000022283 91.03 945.72 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
76. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 91.03 945.72 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
77. Cdk4 ENSMUSG00000006728 89.71 932.00 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
78. Eef2 ENSMUSG00000034994 89.71 932.00 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
79. Lamp1 ENSMUSG00000031447 89.71 932.00 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
80. Rps4x ENSMUSG00000031320 89.71 932.00 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
81. Tecr ENSMUSG00000031708 89.71 932.00 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
82. Col1a2 ENSMUSG00000029661 88.39 918.29 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
83. Morf4l1 ENSMUSG00000062270 88.39 918.29 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
84. Pdia6 ENSMUSG00000020571 87.07 904.57 protein disulfide isomerase associated 6 [Source:MGI Symbol;Acc:MGI:1919103]
85. Ywhae ENSMUSG00000020849 87.07 904.57 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
86. Cd24a ENSMUSG00000047139 85.75 890.86 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
87. Gm15459 ENSMUSG00000100801 85.75 890.86 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
88. Rpl39-ps ENSMUSG00000036305 84.43 877.15 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
89. Rpl8 ENSMUSG00000003970 84.43 877.15 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
90. Rps5 ENSMUSG00000012848 84.43 877.15 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
91. Anp32b ENSMUSG00000028333 81.79 849.72 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
92. Ddx5 ENSMUSG00000020719 81.79 849.72 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
93. Ndufa12 ENSMUSG00000020022 81.79 849.72 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
94. Tmsb4x ENSMUSG00000049775 80.48 836.11 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
95. Top2a ENSMUSG00000020914 80.48 836.11 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
96. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 79.16 822.40 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
97. Peg3 ENSMUSG00000002265 79.16 822.40 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
98. Rpl41 ENSMUSG00000093674 79.16 822.40 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
99. Rrm2 ENSMUSG00000020649 79.16 822.40 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
100. Tpm4 ENSMUSG00000031799 79.16 822.40 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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