Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s71.

Sample reads: 96,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3882.01 40334.51 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2336.57 24277.22 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Nd4 ENSMUSG00000064363 2244.58 23321.43 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. Ptma ENSMUSG00000026238 2177.12 22620.51 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Nd1 ENSMUSG00000064341 1937.94 20135.41 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1901.14 19753.05 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. Actb ENSMUSG00000029580 1244.94 12935.06 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
8. mt-Co1 ENSMUSG00000064351 1232.68 12807.68 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. H19 ENSMUSG00000000031 981.24 10195.19 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. Mdk ENSMUSG00000027239 938.31 9749.14 midkine [Source:MGI Symbol;Acc:MGI:96949]
11. mt-Nd3 ENSMUSG00000064360 895.38 9303.10 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd2 ENSMUSG00000064345 889.24 9239.30 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. mt-Rnr2 ENSMUSG00000064339 791.12 8219.82 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
14. mt-Co3 ENSMUSG00000064358 650.07 6754.30 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Eef1a1 ENSMUSG00000037742 643.94 6690.61 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Igf2 ENSMUSG00000048583 533.55 5543.64 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Rpsa ENSMUSG00000032518 331.17 3440.89 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
18. mt-Nd5 ENSMUSG00000064367 331.17 3440.89 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Gm13340 ENSMUSG00000083563 325.03 3377.10 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Npm1 ENSMUSG00000057113 294.37 3058.54 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Hmga2 ENSMUSG00000056758 288.24 2994.85 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Cfl1 ENSMUSG00000056201 257.57 2676.18 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. Col1a1 ENSMUSG00000001506 257.57 2676.18 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
24. Pkm ENSMUSG00000032294 239.18 2485.11 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
25. Tuba1b ENSMUSG00000023004 220.78 2293.93 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Col3a1 ENSMUSG00000026043 214.65 2230.24 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
27. Tubb5 ENSMUSG00000001525 214.65 2230.24 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Ubb ENSMUSG00000019505 214.65 2230.24 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Eif4g2 ENSMUSG00000005610 208.51 2166.44 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
30. Tpt1 ENSMUSG00000060126 202.38 2102.75 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. Rpl23 ENSMUSG00000071415 196.25 2039.06 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
32. Myl6 ENSMUSG00000090841 190.11 1975.26 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
33. Gm10800 ENSMUSG00000075014 183.98 1911.57 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
34. Set ENSMUSG00000054766 183.98 1911.57 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
35. Eif5a ENSMUSG00000078812 171.72 1784.19 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
36. Nedd4 ENSMUSG00000032216 171.72 1784.19 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
37. Rpl37 ENSMUSG00000041841 171.72 1784.19 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
38. Ago2 ENSMUSG00000036698 159.45 1656.70 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
39. Rrm2 ENSMUSG00000020649 159.45 1656.70 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
40. Grb10 ENSMUSG00000020176 153.32 1593.01 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
41. Rpl32 ENSMUSG00000057841 153.32 1593.01 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
42. Ywhab ENSMUSG00000018326 153.32 1593.01 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
43. Meg3 ENSMUSG00000021268 141.05 1465.52 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
44. Ndufa12 ENSMUSG00000020022 141.05 1465.52 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
45. Rps26 ENSMUSG00000025362 141.05 1465.52 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
46. Sparc ENSMUSG00000018593 141.05 1465.52 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
47. Hsp90ab1 ENSMUSG00000023944 134.92 1401.83 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
48. Morf4l1 ENSMUSG00000062270 134.92 1401.83 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
49. H3f3b ENSMUSG00000016559 128.79 1338.14 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
50. Rpl4 ENSMUSG00000032399 128.79 1338.14 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
51. Scd2 ENSMUSG00000025203 128.79 1338.14 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
52. Stmn1 ENSMUSG00000028832 128.79 1338.14 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
53. Ywhaq ENSMUSG00000076432 128.79 1338.14 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
54. Banf1 ENSMUSG00000024844 122.65 1274.35 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
55. Gpc3 ENSMUSG00000055653 122.65 1274.35 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
56. Rpl18a ENSMUSG00000045128 122.65 1274.35 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
57. Rpl39-ps ENSMUSG00000036305 122.65 1274.35 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
58. Rps3a1 ENSMUSG00000028081 122.65 1274.35 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
59. Tfg ENSMUSG00000022757 122.65 1274.35 Trk-fused gene [Source:MGI Symbol;Acc:MGI:1338041]
60. Tsc22d1 ENSMUSG00000022010 122.65 1274.35 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
61. Col1a2 ENSMUSG00000029661 116.52 1210.66 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
62. Hmgn1 ENSMUSG00000040681 116.52 1210.66 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
63. Ngfrap1 116.52 1210.66 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
64. Sub1 ENSMUSG00000022205 116.52 1210.66 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
65. Tecr ENSMUSG00000031708 116.52 1210.66 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
66. Atp5b ENSMUSG00000025393 110.39 1146.96 ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit [Source:MGI Symbol;Acc:MGI:107801]
67. Atxn7l3b ENSMUSG00000074748 110.39 1146.96 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
68. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 110.39 1146.96 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
69. Morf4l2 ENSMUSG00000031422 110.39 1146.96 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
70. Mrfap1 ENSMUSG00000055302 110.39 1146.96 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
71. Nucks1 ENSMUSG00000026434 110.39 1146.96 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
72. Rplp1 ENSMUSG00000007892 110.39 1146.96 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
73. Sfrp1 ENSMUSG00000031548 110.39 1146.96 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
74. Tmsb10 ENSMUSG00000079523 110.39 1146.96 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
75. Chchd2 ENSMUSG00000070493 104.26 1083.27 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
76. Cltc ENSMUSG00000047126 104.26 1083.27 clathrin, heavy polypeptide (Hc) [Source:MGI Symbol;Acc:MGI:2388633]
77. Fkbp1a ENSMUSG00000032966 104.26 1083.27 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
78. Rps20 ENSMUSG00000028234 104.26 1083.27 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
79. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 104.26 1083.27 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
80. Tpm1 ENSMUSG00000032366 104.26 1083.27 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
81. 2810417H13Rik 98.12 1019.48 RIKEN cDNA 2810417H13 gene
82. Eef1b2 ENSMUSG00000025967 98.12 1019.48 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
83. Gm17132 ENSMUSG00000061331 98.12 1019.48 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
84. Hnrnpa2b1 ENSMUSG00000004980 98.12 1019.48 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
85. Itga6 ENSMUSG00000027111 98.12 1019.48 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
86. Pbx1 ENSMUSG00000052534 98.12 1019.48 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
87. Rps4x ENSMUSG00000031320 98.12 1019.48 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
88. Tmsb4x ENSMUSG00000049775 98.12 1019.48 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
89. Ube2b ENSMUSG00000020390 98.12 1019.48 ubiquitin-conjugating enzyme E2B [Source:MGI Symbol;Acc:MGI:102944]
90. Ybx1 ENSMUSG00000028639 98.12 1019.48 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
91. Atp5g3 ENSMUSG00000018770 91.99 955.79 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
92. Ccnd2 ENSMUSG00000000184 91.99 955.79 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
93. Eef2 ENSMUSG00000034994 91.99 955.79 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
94. Igfbp4 ENSMUSG00000017493 91.99 955.79 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
95. Paics ENSMUSG00000029247 91.99 955.79 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
96. Peg3 ENSMUSG00000002265 91.99 955.79 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
97. Ran ENSMUSG00000029430 91.99 955.79 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
98. Ssbp3 ENSMUSG00000061887 91.99 955.79 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
99. Tcf7l1 ENSMUSG00000055799 91.99 955.79 transcription factor 7 like 1 (T cell specific, HMG box) [Source:MGI Symbol;Acc:MGI:1202876]
100. Yipf5 ENSMUSG00000024487 91.99 955.79 Yip1 domain family, member 5 [Source:MGI Symbol;Acc:MGI:1914430]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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