Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s70.

Sample reads: 96,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3692.84 38369.28 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3597.27 37376.29 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd4 ENSMUSG00000064363 2010.80 20892.58 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Atp6 ENSMUSG00000064357 1930.52 20058.45 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd1 ENSMUSG00000064341 1773.78 18429.90 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1582.64 16443.92 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. Actb ENSMUSG00000029580 1521.48 15808.45 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
8. Mdk ENSMUSG00000027239 1070.39 11121.55 midkine [Source:MGI Symbol;Acc:MGI:96949]
9. mt-Co1 ENSMUSG00000064351 1039.80 10803.71 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. H19 ENSMUSG00000000031 1013.05 10525.77 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. Eef1a1 ENSMUSG00000037742 737.80 7665.88 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. mt-Nd3 ENSMUSG00000064360 707.22 7348.14 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. mt-Nd2 ENSMUSG00000064345 638.41 6633.20 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. mt-Rnr2 ENSMUSG00000064339 607.83 6315.46 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
15. mt-Co3 ENSMUSG00000064358 565.78 5878.56 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Igf2 ENSMUSG00000048583 519.90 5401.86 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. mt-Nd5 ENSMUSG00000064367 389.93 4051.44 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
18. Cfl1 ENSMUSG00000056201 313.47 3257.01 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
19. Pkm ENSMUSG00000032294 305.82 3177.53 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
20. Gm13340 ENSMUSG00000083563 302.00 3137.83 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Rpsa ENSMUSG00000032518 275.24 2859.79 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
22. Tuba1b ENSMUSG00000023004 263.77 2740.62 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Tubb5 ENSMUSG00000001525 263.77 2740.62 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
24. Ubb ENSMUSG00000019505 244.66 2542.06 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
25. Col1a1 ENSMUSG00000001506 237.01 2462.58 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
26. Gm10800 ENSMUSG00000075014 237.01 2462.58 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
27. Nedd4 ENSMUSG00000032216 233.19 2422.89 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Eif5a ENSMUSG00000078812 191.14 1985.98 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
29. Hmga2 ENSMUSG00000056758 183.49 1906.49 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
30. Col3a1 ENSMUSG00000026043 179.67 1866.80 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
31. Hsp90ab1 ENSMUSG00000023944 175.85 1827.11 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Ngfrap1 175.85 1827.11 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
33. Tpt1 ENSMUSG00000060126 175.85 1827.11 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
34. Npm1 ENSMUSG00000057113 172.03 1787.42 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
35. Rpl4 ENSMUSG00000032399 172.03 1787.42 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
36. Rps20 ENSMUSG00000028234 172.03 1787.42 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
37. Ywhab ENSMUSG00000018326 172.03 1787.42 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
38. Banf1 ENSMUSG00000024844 168.20 1747.63 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
39. Eif4g2 ENSMUSG00000005610 168.20 1747.63 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
40. Grb10 ENSMUSG00000020176 168.20 1747.63 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
41. Rrm2 ENSMUSG00000020649 168.20 1747.63 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
42. Sfrp1 ENSMUSG00000031548 168.20 1747.63 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
43. Atp5g3 ENSMUSG00000018770 149.09 1549.07 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Rpl18a ENSMUSG00000045128 145.27 1509.38 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
45. Set ENSMUSG00000054766 141.44 1469.59 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
46. Pcbp1 ENSMUSG00000051695 137.62 1429.90 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
47. Tmsb10 ENSMUSG00000079523 137.62 1429.90 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
48. Chchd2 ENSMUSG00000070493 133.80 1390.21 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
49. Col1a2 ENSMUSG00000029661 133.80 1390.21 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
50. Ran ENSMUSG00000029430 133.80 1390.21 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
51. Myl6 ENSMUSG00000090841 129.98 1350.52 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
52. Ywhaz ENSMUSG00000022285 129.98 1350.52 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
53. Igfbp4 ENSMUSG00000017493 126.15 1310.72 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
54. Meg3 ENSMUSG00000021268 126.15 1310.72 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
55. Rpl23 ENSMUSG00000071415 122.33 1271.03 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
56. Rps26 ENSMUSG00000025362 122.33 1271.03 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
57. Fkbp1a ENSMUSG00000032966 118.51 1231.34 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
58. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 114.68 1191.55 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
59. Tecr ENSMUSG00000031708 114.68 1191.55 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
60. Ago2 ENSMUSG00000036698 110.86 1151.86 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
61. Eef1b2 ENSMUSG00000025967 110.86 1151.86 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
62. Paics ENSMUSG00000029247 110.86 1151.86 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
63. Ybx1 ENSMUSG00000028639 110.86 1151.86 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
64. Anp32b ENSMUSG00000028333 107.04 1112.17 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
65. Cdk4 ENSMUSG00000006728 107.04 1112.17 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
66. Gm14586 ENSMUSG00000083621 107.04 1112.17 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
67. Igfbp5 ENSMUSG00000026185 107.04 1112.17 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
68. Scd2 ENSMUSG00000025203 107.04 1112.17 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
69. Srsf3 ENSMUSG00000071172 107.04 1112.17 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
70. Trim28 ENSMUSG00000005566 107.04 1112.17 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
71. Ywhae ENSMUSG00000020849 107.04 1112.17 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
72. Hbb-y ENSMUSG00000052187 103.22 1072.47 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
73. Itga6 ENSMUSG00000027111 103.22 1072.47 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
74. Tmpo ENSMUSG00000019961 103.22 1072.47 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
75. Tpm4 ENSMUSG00000031799 103.22 1072.47 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
76. Lamp1 ENSMUSG00000031447 99.39 1032.68 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
77. Ndufa12 ENSMUSG00000020022 99.39 1032.68 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
78. Rpl32 ENSMUSG00000057841 99.39 1032.68 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
79. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 95.57 992.99 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
80. Arpc2 ENSMUSG00000006304 95.57 992.99 actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
81. Hnrnpc ENSMUSG00000060373 95.57 992.99 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
82. Rps3a1 ENSMUSG00000028081 95.57 992.99 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
83. Sparc ENSMUSG00000018593 95.57 992.99 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
84. Eef2 ENSMUSG00000034994 91.75 953.30 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
85. Morf4l1 ENSMUSG00000062270 91.75 953.30 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
86. Plagl1 ENSMUSG00000019817 91.75 953.30 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
87. Snrpb ENSMUSG00000027404 91.75 953.30 small nuclear ribonucleoprotein B [Source:MGI Symbol;Acc:MGI:98342]
88. Gm2000 ENSMUSG00000078193 87.92 913.50 predicted gene 2000 [Source:MGI Symbol;Acc:MGI:3780170]
89. Gm5963 ENSMUSG00000052192 87.92 913.50 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
90. Hmgn1 ENSMUSG00000040681 87.92 913.50 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
91. Hnrnpa2b1 ENSMUSG00000004980 87.92 913.50 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
92. Hsp90aa1 ENSMUSG00000021270 87.92 913.50 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
93. Rplp1 ENSMUSG00000007892 87.92 913.50 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
94. Ssbp3 ENSMUSG00000061887 87.92 913.50 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
95. Jund ENSMUSG00000071076, ENSMUSG00000110974 84.10 873.81 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
96. Maged1 ENSMUSG00000025151 84.10 873.81 melanoma antigen, family D, 1 [Source:MGI Symbol;Acc:MGI:1930187]
97. Nnat ENSMUSG00000067786 84.10 873.81 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
98. Rpl8 ENSMUSG00000003970 84.10 873.81 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
99. Wbp5 84.10 873.81 WW domain binding protein 5
100. Zfp386 ENSMUSG00000042063 84.10 873.81 zinc finger protein 386 (Kruppel-like) [Source:MGI Symbol;Acc:MGI:1930708]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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