Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s68.

Sample reads: 96,248. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3733.80 38793.41 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3711.43 38560.99 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2360.27 24522.72 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1872.20 19451.77 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 1868.08 19408.96 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 1775.65 18448.64 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1103.30 11463.06 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1036.19 10765.80 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. Mdk ENSMUSG00000027239 925.50 9615.75 midkine [Source:MGI Symbol;Acc:MGI:96949]
10. mt-Nd3 ENSMUSG00000064360 803.04 8343.42 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Actb ENSMUSG00000029580 794.21 8251.68 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Co3 ENSMUSG00000064358 735.93 7646.16 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. mt-Nd2 ENSMUSG00000064345 682.35 7089.48 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. Eef1a1 ENSMUSG00000037742 618.18 6422.76 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Igf2 ENSMUSG00000048583 487.48 5064.82 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Tuba1b ENSMUSG00000023004 357.37 3713.00 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
17. Tubb5 ENSMUSG00000001525 345.59 3590.61 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
18. Rpsa ENSMUSG00000032518 322.04 3345.93 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Pkm ENSMUSG00000032294 316.15 3284.73 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
20. Gm13340 ENSMUSG00000083563 309.09 3211.38 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. mt-Rnr2 ENSMUSG00000064339 296.73 3082.96 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
22. mt-Nd5 ENSMUSG00000064367 276.71 2874.96 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Hmga2 ENSMUSG00000056758 271.41 2819.89 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
24. Cfl1 ENSMUSG00000056201 267.88 2783.22 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Npm1 ENSMUSG00000057113 266.70 2770.96 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Nedd4 ENSMUSG00000032216 234.32 2434.54 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Gm10800 ENSMUSG00000075014 213.71 2220.40 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
28. Tpt1 ENSMUSG00000060126 212.54 2208.25 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
29. Ubb ENSMUSG00000019505 204.29 2122.53 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
30. Col3a1 ENSMUSG00000026043 200.76 2085.85 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
31. Rpl4 ENSMUSG00000032399 200.17 2079.72 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
32. Eif4g2 ENSMUSG00000005610 197.82 2055.31 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Eif5a ENSMUSG00000078812 195.46 2030.79 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
34. Chchd2 ENSMUSG00000070493 194.87 2024.66 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
35. Hsp90ab1 ENSMUSG00000023944 181.33 1883.98 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
36. Rps20 ENSMUSG00000028234 158.37 1645.43 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
37. Rpl23 ENSMUSG00000071415 157.19 1633.17 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
38. Grb10 ENSMUSG00000020176 152.48 1584.24 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
39. Myl6 ENSMUSG00000090841 152.48 1584.24 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
40. Tmsb10 ENSMUSG00000079523 150.13 1559.82 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
41. Hbb-y ENSMUSG00000052187 148.95 1547.56 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
42. Ndufa12 ENSMUSG00000020022 146.60 1523.14 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
43. Rps26 ENSMUSG00000025362 146.60 1523.14 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
44. Fkbp1a ENSMUSG00000032966 142.48 1480.34 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
45. Banf1 ENSMUSG00000024844 141.30 1468.08 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
46. Hmgn1 ENSMUSG00000040681 136.59 1419.14 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
47. Paics ENSMUSG00000029247 136.00 1413.01 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
48. Hnrnpa2b1 ENSMUSG00000004980 135.41 1406.88 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
49. Hsp90aa1 ENSMUSG00000021270 135.41 1406.88 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
50. Ywhab ENSMUSG00000018326 133.64 1388.49 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
51. Sfrp1 ENSMUSG00000031548 130.70 1357.95 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
52. Eef1b2 ENSMUSG00000025967 127.17 1321.27 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
53. Hnrnpc ENSMUSG00000060373 127.17 1321.27 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
54. Trim28 ENSMUSG00000005566 126.58 1315.14 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
55. Rps4x ENSMUSG00000031320 124.81 1296.75 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
56. Ran ENSMUSG00000029430 121.28 1260.07 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
57. Atp5g3 ENSMUSG00000018770 119.51 1241.68 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
58. Col1a1 ENSMUSG00000001506 117.16 1217.27 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
59. Rpl18a ENSMUSG00000045128 117.16 1217.27 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
60. Pcbp1 ENSMUSG00000051695 116.57 1211.14 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
61. Rpl41 ENSMUSG00000093674 113.63 1180.59 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
62. Rpl32 ENSMUSG00000057841 111.27 1156.07 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
63. Rpl37 ENSMUSG00000041841 110.09 1143.81 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
64. U2af2 ENSMUSG00000030435 106.56 1107.14 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
65. Anp32b ENSMUSG00000028333 105.97 1101.01 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
66. Cdk4 ENSMUSG00000006728 105.97 1101.01 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
67. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 105.97 1101.01 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
68. Igfbp4 ENSMUSG00000017493 105.38 1094.88 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
69. Rplp1 ENSMUSG00000007892 104.21 1082.72 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
70. Ngfrap1 103.62 1076.59 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
71. Pabpc1 ENSMUSG00000022283 103.62 1076.59 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
72. Rps3a1 ENSMUSG00000028081 103.62 1076.59 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
73. Ybx1 ENSMUSG00000028639 98.91 1027.65 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
74. Hba-a1 ENSMUSG00000069919 98.32 1021.52 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
75. Tecr ENSMUSG00000031708 97.73 1015.39 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
76. Gm15459 ENSMUSG00000100801 97.14 1009.26 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
77. Rps15 ENSMUSG00000063457 97.14 1009.26 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
78. Cox8a ENSMUSG00000035885 95.96 997.00 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
79. Ddx5 ENSMUSG00000020719 95.96 997.00 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
80. Fkbp4 ENSMUSG00000030357 94.79 984.85 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
81. Ywhae ENSMUSG00000020849 94.79 984.85 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
82. Gm5805 ENSMUSG00000061848 93.61 972.59 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
83. Gm9844 ENSMUSG00000091955 93.61 972.59 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
84. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 93.02 966.46 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
85. Srsf3 ENSMUSG00000071172 93.02 966.46 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
86. Hba-x ENSMUSG00000055609 92.43 960.33 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
87. Lamp1 ENSMUSG00000031447 90.08 935.91 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
88. Plagl1 ENSMUSG00000019817 90.08 935.91 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
89. Tsc22d1 ENSMUSG00000022010 88.90 923.65 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
90. Morf4l1 ENSMUSG00000062270 87.13 905.26 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
91. Marcks ENSMUSG00000069662 85.96 893.11 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
92. Pbx1 ENSMUSG00000052534 85.96 893.11 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
93. Pfn1 ENSMUSG00000018293 85.37 886.98 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
94. Sub1 ENSMUSG00000022205 84.78 880.85 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
95. Cd24a ENSMUSG00000047139 84.19 874.72 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
96. Ddx39b ENSMUSG00000019432 84.19 874.72 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
97. Rpl39-ps ENSMUSG00000036305 84.19 874.72 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
98. Rpl8 ENSMUSG00000003970 84.19 874.72 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
99. H3f3b ENSMUSG00000016559 83.60 868.59 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
100. Ldha ENSMUSG00000063229 83.60 868.59 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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