Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s67.

Sample reads: 96,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3127.52 32496.85 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2616.65 27188.60 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 1968.72 20456.21 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1956.26 20326.74 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 1657.21 17219.43 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. Actb ENSMUSG00000029580 1258.48 13076.38 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
7. H19 ENSMUSG00000000031 1208.64 12558.51 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co2 ENSMUSG00000064354 1192.03 12385.92 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. Mdk ENSMUSG00000027239 1104.81 11479.65 midkine [Source:MGI Symbol;Acc:MGI:96949]
10. mt-Co1 ENSMUSG00000064351 1059.12 11004.91 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd3 ENSMUSG00000064360 764.23 7940.82 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd2 ENSMUSG00000064345 701.93 7293.48 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. mt-Co3 ENSMUSG00000064358 656.24 6818.74 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. Eef1a1 ENSMUSG00000037742 647.93 6732.39 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. mt-Rnr2 ENSMUSG00000064339 481.80 5006.20 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
16. Gm10800 ENSMUSG00000075014 427.80 4445.10 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
17. Igf2 ENSMUSG00000048583 369.65 3840.89 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Pkm ENSMUSG00000032294 365.50 3797.77 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
19. Cfl1 ENSMUSG00000056201 332.27 3452.49 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
20. Rpsa ENSMUSG00000032518 328.12 3409.37 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Tubb5 ENSMUSG00000001525 328.12 3409.37 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
22. Gm13340 ENSMUSG00000083563 290.74 3020.97 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
23. Npm1 ENSMUSG00000057113 286.59 2977.85 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Tpt1 ENSMUSG00000060126 265.82 2762.03 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
25. Nedd4 ENSMUSG00000032216 261.66 2718.81 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. mt-Nd5 ENSMUSG00000064367 261.66 2718.81 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
27. Hmga2 ENSMUSG00000056758 249.20 2589.34 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
28. Rpl37 ENSMUSG00000041841 240.90 2503.10 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
29. Rpl4 ENSMUSG00000032399 240.90 2503.10 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
30. Tuba1b ENSMUSG00000023004 228.44 2373.63 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
31. Rps20 ENSMUSG00000028234 220.13 2287.29 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
32. Myl6 ENSMUSG00000090841 199.36 2071.47 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
33. Rpl23 ENSMUSG00000071415 199.36 2071.47 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
34. Ubb ENSMUSG00000019505 195.21 2028.35 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
35. Rpl18a ENSMUSG00000045128 186.90 1942.01 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
36. Rrm2 ENSMUSG00000020649 186.90 1942.01 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
37. Hsp90ab1 ENSMUSG00000023944 182.75 1898.88 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Banf1 ENSMUSG00000024844 170.29 1769.42 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
39. Col3a1 ENSMUSG00000026043 170.29 1769.42 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
40. Eif5a ENSMUSG00000078812 166.14 1726.30 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
41. Hbb-y ENSMUSG00000052187 161.98 1683.07 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
42. Hnrnpa2b1 ENSMUSG00000004980 161.98 1683.07 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
43. Hsp90aa1 ENSMUSG00000021270 161.98 1683.07 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
44. Grb10 ENSMUSG00000020176 153.68 1596.83 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
45. Hmgn1 ENSMUSG00000040681 153.68 1596.83 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
46. Hnrnpc ENSMUSG00000060373 153.68 1596.83 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
47. Fkbp1a ENSMUSG00000032966 149.52 1553.60 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
48. Paics ENSMUSG00000029247 149.52 1553.60 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
49. Rps26 ENSMUSG00000025362 149.52 1553.60 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
50. Ywhab ENSMUSG00000018326 149.52 1553.60 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
51. Rpl32 ENSMUSG00000057841 145.37 1510.48 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
52. Chchd2 ENSMUSG00000070493 141.22 1467.36 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
53. Gm14586 ENSMUSG00000083621 141.22 1467.36 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
54. Ndufa12 ENSMUSG00000020022 137.06 1424.14 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
55. H3f3b ENSMUSG00000016559 132.91 1381.02 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
56. U2af2 ENSMUSG00000030435 132.91 1381.02 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
57. Cdkn1c ENSMUSG00000037664 128.76 1337.90 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
58. Rpl39-ps ENSMUSG00000036305 128.76 1337.90 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
59. Ago2 ENSMUSG00000036698 124.60 1294.67 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
60. Eif4g2 ENSMUSG00000005610 124.60 1294.67 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
61. Meg3 ENSMUSG00000021268 124.60 1294.67 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
62. Sfrp1 ENSMUSG00000031548 124.60 1294.67 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
63. Trim28 ENSMUSG00000005566 124.60 1294.67 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
64. Fkbp4 ENSMUSG00000030357 120.45 1251.55 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
65. Col1a1 ENSMUSG00000001506 116.30 1208.43 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
66. Eef2 ENSMUSG00000034994 116.30 1208.43 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
67. Hnrnph1 ENSMUSG00000007850 116.30 1208.43 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
68. Atp5g3 ENSMUSG00000018770 112.14 1165.20 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
69. Morf4l2 ENSMUSG00000031422 112.14 1165.20 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
70. Pcbp1 ENSMUSG00000051695 112.14 1165.20 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
71. Cox8a ENSMUSG00000035885 107.99 1122.08 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
72. Gm10073 ENSMUSG00000060019 107.99 1122.08 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
73. Plagl1 ENSMUSG00000019817 107.99 1122.08 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
74. Tmsb10 ENSMUSG00000079523 107.99 1122.08 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
75. Cdk1 ENSMUSG00000019942 103.84 1078.96 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
76. Cdk4 ENSMUSG00000006728 103.84 1078.96 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
77. Igfbp4 ENSMUSG00000017493 103.84 1078.96 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
78. Rps3a1 ENSMUSG00000028081 103.84 1078.96 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
79. Ywhaz ENSMUSG00000022285 103.84 1078.96 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
80. Anp32b ENSMUSG00000028333 99.68 1035.74 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
81. Ddx5 ENSMUSG00000020719 99.68 1035.74 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
82. Eef1b2 ENSMUSG00000025967 99.68 1035.74 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
83. Gnai2 ENSMUSG00000032562 99.68 1035.74 guanine nucleotide binding protein (G protein), alpha inhibiting 2 [Source:MGI Symbol;Acc:MGI:95772]
84. Hba-a1 ENSMUSG00000069919 99.68 1035.74 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
85. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 99.68 1035.74 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
86. Morf4l1 ENSMUSG00000062270 99.68 1035.74 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
87. Ngfrap1 99.68 1035.74 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
88. Rplp1 ENSMUSG00000007892 99.68 1035.74 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
89. Sub1 ENSMUSG00000022205 99.68 1035.74 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
90. Gm15459 ENSMUSG00000100801 95.53 992.62 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
91. Lbh ENSMUSG00000024063 95.53 992.62 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
92. Ppp1ca ENSMUSG00000040385, ENSMUSG00000096994 95.53 992.62 protein phosphatase 1 catalytic subunit alpha [Source:MGI Symbol;Acc:MGI:103016]
93. Rps4x ENSMUSG00000031320 95.53 992.62 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
94. Gm5805 ENSMUSG00000061848 91.37 949.39 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
95. Ran ENSMUSG00000029430 91.37 949.39 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
96. Sparc ENSMUSG00000018593 91.37 949.39 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
97. Srsf3 ENSMUSG00000071172 91.37 949.39 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
98. Srsf6 ENSMUSG00000016921 91.37 949.39 serine/arginine-rich splicing factor 6 [Source:MGI Symbol;Acc:MGI:1915246]
99. Tecr ENSMUSG00000031708 91.37 949.39 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
100. Dpysl2 ENSMUSG00000022048 87.22 906.27 dihydropyrimidinase-like 2 [Source:MGI Symbol;Acc:MGI:1349763]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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