Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E11_5_slice_3, section s66.

Sample reads: 96,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3724.76 38699.17 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3690.82 38346.54 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2330.00 24208.02 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1771.88 18409.32 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 1721.77 17888.69 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 1113.55 11569.46 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. H19 ENSMUSG00000000031 1031.66 10718.65 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co1 ENSMUSG00000064351 1027.89 10679.48 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Mdk ENSMUSG00000027239 862.50 8961.12 midkine [Source:MGI Symbol;Acc:MGI:96949]
10. Actb ENSMUSG00000029580 834.49 8670.11 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. Eef1a1 ENSMUSG00000037742 775.23 8054.41 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. mt-Nd3 ENSMUSG00000064360 766.61 7964.85 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. mt-Nd2 ENSMUSG00000064345 649.17 6744.69 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. mt-Co3 ENSMUSG00000064358 599.07 6224.16 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Igf2 ENSMUSG00000048583 481.62 5003.89 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Pkm ENSMUSG00000032294 359.87 3738.94 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
17. Tubb5 ENSMUSG00000001525 343.17 3565.44 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
18. Hmga2 ENSMUSG00000056758 336.17 3492.71 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. Tuba1b ENSMUSG00000023004 329.70 3425.49 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. Rpsa ENSMUSG00000032518 310.85 3229.64 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Cfl1 ENSMUSG00000056201 301.15 3128.86 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Gm13340 ENSMUSG00000083563 289.84 3011.35 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
23. Hbb-y ENSMUSG00000052187 260.21 2703.51 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
24. mt-Rnr2 ENSMUSG00000064339 258.59 2686.67 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
25. mt-Nd5 ENSMUSG00000064367 255.90 2658.73 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
26. Npm1 ENSMUSG00000057113 246.20 2557.95 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Tpt1 ENSMUSG00000060126 246.20 2557.95 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Nedd4 ENSMUSG00000032216 225.19 2339.66 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
29. Eif4g2 ENSMUSG00000005610 210.64 2188.49 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
30. Col3a1 ENSMUSG00000026043 195.02 2026.20 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
31. Rpl18a ENSMUSG00000045128 190.71 1981.42 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
32. Rpl4 ENSMUSG00000032399 186.40 1936.64 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. Ubb ENSMUSG00000019505 180.47 1875.03 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Rpl23 ENSMUSG00000071415 177.78 1847.08 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
35. Eif5a ENSMUSG00000078812 171.32 1779.96 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
36. Rps20 ENSMUSG00000028234 169.16 1757.52 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
37. Myl6 ENSMUSG00000090841 159.46 1656.74 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
38. Hba-x ENSMUSG00000055609 153.54 1595.24 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
39. Grb10 ENSMUSG00000020176 153.00 1589.63 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
40. Hba-a1 ENSMUSG00000069919 153.00 1589.63 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
41. Hsp90ab1 ENSMUSG00000023944 151.92 1578.40 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
42. Chchd2 ENSMUSG00000070493 151.38 1572.79 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
43. Trim28 ENSMUSG00000005566 151.38 1572.79 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
44. Gm10800 ENSMUSG00000075014 150.31 1561.68 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
45. Hnrnpa2b1 ENSMUSG00000004980 149.23 1550.46 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
46. Fkbp1a ENSMUSG00000032966 148.69 1544.85 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
47. Paics ENSMUSG00000029247 143.84 1494.46 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
48. Rrm2 ENSMUSG00000020649 140.07 1455.29 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
49. Hmgn1 ENSMUSG00000040681 136.84 1421.73 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
50. Hsp90aa1 ENSMUSG00000021270 133.60 1388.07 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
51. Ndufa12 ENSMUSG00000020022 129.29 1343.29 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
52. Eef1b2 ENSMUSG00000025967 127.68 1326.56 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
53. Rplp1 ENSMUSG00000007892 127.68 1326.56 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
54. Cdk4 ENSMUSG00000006728 123.91 1287.39 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
55. Tmsb10 ENSMUSG00000079523 121.75 1264.95 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
56. Ywhaz ENSMUSG00000022285 121.21 1259.34 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
57. Banf1 ENSMUSG00000024844 120.67 1253.73 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
58. Igfbp4 ENSMUSG00000017493 118.52 1231.39 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
59. Sfrp1 ENSMUSG00000031548 114.75 1192.22 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
60. Plagl1 ENSMUSG00000019817 113.67 1181.00 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
61. Ran ENSMUSG00000029430 113.67 1181.00 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
62. Ywhae ENSMUSG00000020849 113.67 1181.00 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
63. Ngfrap1 111.52 1158.66 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
64. Rpl32 ENSMUSG00000057841 111.52 1158.66 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
65. Pfn1 ENSMUSG00000018293 110.98 1153.05 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
66. Ywhab ENSMUSG00000018326 109.90 1141.83 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
67. Rps3a1 ENSMUSG00000028081 108.82 1130.61 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
68. Rpl37 ENSMUSG00000041841 108.28 1125.00 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
69. Lbh ENSMUSG00000024063 107.21 1113.88 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
70. Lamp1 ENSMUSG00000031447 106.13 1102.66 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
71. Tpm4 ENSMUSG00000031799 105.05 1091.44 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
72. Scd2 ENSMUSG00000025203 104.51 1085.83 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
73. Col1a1 ENSMUSG00000001506 103.97 1080.22 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
74. Rpl39-ps ENSMUSG00000036305 102.90 1069.10 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
75. Atp5g3 ENSMUSG00000018770 102.36 1063.49 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
76. Pcbp1 ENSMUSG00000051695 102.36 1063.49 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
77. Rps4x ENSMUSG00000031320 101.28 1052.27 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
78. Tecr ENSMUSG00000031708 99.66 1035.44 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
79. Hnrnph1 ENSMUSG00000007850 99.13 1029.93 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
80. Ddx5 ENSMUSG00000020719 98.59 1024.32 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
81. Srsf3 ENSMUSG00000071172 96.97 1007.49 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
82. Ldha ENSMUSG00000063229 96.43 1001.88 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
83. Rps15 ENSMUSG00000063457 96.43 1001.88 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
84. Cdkn1c ENSMUSG00000037664 95.89 996.27 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
85. Morf4l2 ENSMUSG00000031422 95.89 996.27 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
86. Pabpc1 ENSMUSG00000022283 95.89 996.27 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
87. Rps26 ENSMUSG00000025362 95.35 990.66 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
88. Rps5 ENSMUSG00000012848 95.35 990.66 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
89. Hnrnpc ENSMUSG00000060373 94.28 979.54 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
90. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 93.74 973.93 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
91. Sub1 ENSMUSG00000022205 93.74 973.93 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
92. Anp32b ENSMUSG00000028333 92.12 957.10 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
93. Morf4l1 ENSMUSG00000062270 91.04 945.88 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
94. Ywhaq ENSMUSG00000076432 90.51 940.37 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
95. Cd24a ENSMUSG00000047139 89.97 934.76 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
96. Ybx1 ENSMUSG00000028639 89.43 929.15 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
97. Hspe1 ENSMUSG00000073676 88.89 923.54 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
98. Itga6 ENSMUSG00000027111 88.89 923.54 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
99. Prdx1 ENSMUSG00000028691 88.35 917.93 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
100. Eef2 ENSMUSG00000034994 87.81 912.32 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA