Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s65.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3523.84 36616.32 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3061.13 31808.29 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2362.02 24543.82 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 1814.45 18854.00 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1652.81 17174.40 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1094.13 11369.14 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. Mdk ENSMUSG00000027239 1055.74 10970.22 midkine [Source:MGI Symbol;Acc:MGI:96949]
8. H19 ENSMUSG00000000031 968.85 10067.35 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Co1 ENSMUSG00000064351 965.82 10035.86 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. Actb ENSMUSG00000029580 793.07 8240.81 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Nd2 ENSMUSG00000064345 714.26 7421.90 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. mt-Nd3 ENSMUSG00000064360 712.24 7400.91 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Eef1a1 ENSMUSG00000037742 635.46 6603.08 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. mt-Co3 ENSMUSG00000064358 604.14 6277.64 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Gm10800 ENSMUSG00000075014 415.22 4314.56 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
16. Igf2 ENSMUSG00000048583 412.19 4283.08 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Pkm ENSMUSG00000032294 400.07 4157.14 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
18. Tuba1b ENSMUSG00000023004 391.99 4073.18 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
19. Gm13340 ENSMUSG00000083563 369.76 3842.19 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. mt-Rnr2 ENSMUSG00000064339 366.73 3810.70 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
21. Cfl1 ENSMUSG00000056201 355.62 3695.26 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Tubb5 ENSMUSG00000001525 324.30 3369.81 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Hmga2 ENSMUSG00000056758 311.16 3233.27 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
24. Rpl18a ENSMUSG00000045128 293.99 3054.86 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
25. mt-Nd5 ENSMUSG00000064367 276.82 2876.44 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
26. Tpt1 ENSMUSG00000060126 262.67 2729.41 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
27. Npm1 ENSMUSG00000057113 247.52 2571.99 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Rpsa ENSMUSG00000032518 235.39 2445.94 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
29. Rpl4 ENSMUSG00000032399 231.35 2403.96 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
30. Hbb-y ENSMUSG00000052187 230.34 2393.47 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
31. Ubb ENSMUSG00000019505 215.19 2236.05 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Nedd4 ENSMUSG00000032216 204.08 2120.60 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
33. Fkbp1a ENSMUSG00000032966 183.87 1910.60 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
34. Eif4g2 ENSMUSG00000005610 175.79 1826.64 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Hsp90ab1 ENSMUSG00000023944 173.77 1805.65 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
36. Col3a1 ENSMUSG00000026043 172.76 1795.15 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
37. Ndufa12 ENSMUSG00000020022 169.73 1763.67 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
38. Myl6 ENSMUSG00000090841 168.72 1753.17 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
39. Rps20 ENSMUSG00000028234 168.72 1753.17 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
40. Hnrnpa2b1 ENSMUSG00000004980 163.66 1700.60 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
41. Banf1 ENSMUSG00000024844 161.64 1679.61 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
42. Rrm2 ENSMUSG00000020649 156.59 1627.13 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
43. Eef1b2 ENSMUSG00000025967 154.57 1606.14 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Hsp90aa1 ENSMUSG00000021270 150.53 1564.16 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
45. Rpl23 ENSMUSG00000071415 150.53 1564.16 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Hba-x ENSMUSG00000055609 148.51 1543.17 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
47. Paics ENSMUSG00000029247 145.48 1511.69 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
48. Grb10 ENSMUSG00000020176 144.47 1501.19 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
49. Sfrp1 ENSMUSG00000031548 144.47 1501.19 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
50. Chchd2 ENSMUSG00000070493 143.46 1490.70 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
51. Rpl32 ENSMUSG00000057841 141.44 1469.71 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
52. Ngfrap1 138.41 1438.22 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
53. Tmsb10 ENSMUSG00000079523 138.41 1438.22 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
54. Cdk4 ENSMUSG00000006728 134.37 1396.24 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
55. Plagl1 ENSMUSG00000019817 132.35 1375.25 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
56. Hba-a1 ENSMUSG00000069919 125.27 1301.68 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
57. Ran ENSMUSG00000029430 125.27 1301.68 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
58. Rplp1 ENSMUSG00000007892 124.26 1291.19 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
59. Trim28 ENSMUSG00000005566 124.26 1291.19 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
60. Hmgn1 ENSMUSG00000040681 121.23 1259.70 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
61. Lbh ENSMUSG00000024063 121.23 1259.70 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
62. Morf4l2 ENSMUSG00000031422 119.21 1238.71 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
63. Eif5a ENSMUSG00000078812 116.18 1207.23 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
64. Tecr ENSMUSG00000031708 115.17 1196.73 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
65. Cdkn1c ENSMUSG00000037664 114.16 1186.24 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
66. Scd2 ENSMUSG00000025203 113.15 1175.74 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
67. Hnrnpc ENSMUSG00000060373 111.13 1154.76 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
68. Eef2 ENSMUSG00000034994 110.12 1144.26 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
69. Rpl39-ps ENSMUSG00000036305 110.12 1144.26 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
70. Gm9844 ENSMUSG00000091955 107.09 1112.78 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
71. Col1a1 ENSMUSG00000001506 105.07 1091.79 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
72. Igfbp4 ENSMUSG00000017493 104.06 1081.29 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
73. Rps26 ENSMUSG00000025362 104.06 1081.29 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
74. Ywhae ENSMUSG00000020849 104.06 1081.29 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
75. Cdc42 ENSMUSG00000006699 103.05 1070.80 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
76. Gm14586 ENSMUSG00000083621 103.05 1070.80 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
77. Jund ENSMUSG00000071076, ENSMUSG00000110974 102.04 1060.30 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
78. Hnrnph1 ENSMUSG00000007850 100.02 1039.31 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
79. H3f3b ENSMUSG00000016559 98.00 1018.32 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
80. Ywhab ENSMUSG00000018326 98.00 1018.32 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
81. Gm15459 ENSMUSG00000100801 95.98 997.33 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
82. Hspe1 ENSMUSG00000073676 95.98 997.33 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
83. Morf4l1 ENSMUSG00000062270 95.98 997.33 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
84. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 95.98 997.33 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
85. Gm14303 ENSMUSG00000081344 94.97 986.84 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
86. Atp5g3 ENSMUSG00000018770 93.96 976.34 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
87. Rpl41 ENSMUSG00000093674 93.96 976.34 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
88. Rps4x ENSMUSG00000031320 93.96 976.34 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
89. Ywhaz ENSMUSG00000022285 93.96 976.34 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
90. Prdx1 ENSMUSG00000028691 92.95 965.85 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
91. Ddx5 ENSMUSG00000020719 91.94 955.35 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
92. Kpnb1 ENSMUSG00000001440 90.92 944.75 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
93. Pabpc1 ENSMUSG00000022283 90.92 944.75 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
94. Ddx39b ENSMUSG00000019432 89.91 934.26 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
95. Anp32b ENSMUSG00000028333 87.89 913.27 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
96. Tubb2b ENSMUSG00000045136 87.89 913.27 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
97. Ywhaq ENSMUSG00000076432 87.89 913.27 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
98. Rps3a1 ENSMUSG00000028081 86.88 902.77 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
99. Ybx1 ENSMUSG00000028639 86.88 902.77 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
100. Slc38a2 ENSMUSG00000022462 84.86 881.78 solute carrier family 38, member 2 [Source:MGI Symbol;Acc:MGI:1915010]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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