Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s64.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3573.52 37125.82 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3384.58 35162.89 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd1 ENSMUSG00000064341 2313.41 24034.35 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Atp6 ENSMUSG00000064357 2292.59 23818.05 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Co2 ENSMUSG00000064354 2151.25 22349.65 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2128.94 22117.87 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1222.91 12704.99 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 907.51 9428.25 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. Actb ENSMUSG00000029580 845.03 8779.14 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. H19 ENSMUSG00000000031 749.81 7789.88 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Co3 ENSMUSG00000064358 703.69 7310.74 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. mt-Nd2 ENSMUSG00000064345 699.23 7264.40 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. mt-Rnr2 ENSMUSG00000064339 696.26 7233.55 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
14. Mdk ENSMUSG00000027239 659.06 6847.07 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Eef1a1 ENSMUSG00000037742 605.50 6290.63 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Gm10800 ENSMUSG00000075014 529.63 5502.40 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
17. Igf2 ENSMUSG00000048583 419.54 4358.66 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Rpsa ENSMUSG00000032518 360.03 3740.40 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Hmga2 ENSMUSG00000056758 337.71 3508.52 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. mt-Nd5 ENSMUSG00000064367 325.81 3384.89 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. Pkm ENSMUSG00000032294 324.32 3369.41 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
22. Gm13340 ENSMUSG00000083563 313.91 3261.26 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
23. Npm1 ENSMUSG00000057113 309.45 3214.92 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Tubb5 ENSMUSG00000001525 303.50 3153.11 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Cfl1 ENSMUSG00000056201 281.18 2921.22 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Tuba1b ENSMUSG00000023004 275.23 2859.40 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Hbb-y ENSMUSG00000052187 245.47 2550.22 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
28. Tpt1 ENSMUSG00000060126 220.18 2287.48 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
29. Hsp90ab1 ENSMUSG00000023944 211.26 2194.81 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
30. Rpl4 ENSMUSG00000032399 203.82 2117.52 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
31. Rps20 ENSMUSG00000028234 199.36 2071.18 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
32. Nedd4 ENSMUSG00000032216 193.40 2009.26 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
33. Ubb ENSMUSG00000019505 188.94 1962.93 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Col3a1 ENSMUSG00000026043 178.53 1854.77 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
35. Eif4g2 ENSMUSG00000005610 174.06 1808.33 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Eif5a ENSMUSG00000078812 169.60 1762.00 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
37. Chchd2 ENSMUSG00000070493 160.67 1669.22 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Rpl23 ENSMUSG00000071415 157.70 1638.37 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
39. Atp5g3 ENSMUSG00000018770 154.72 1607.41 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
40. Banf1 ENSMUSG00000024844 151.75 1576.55 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
41. Grb10 ENSMUSG00000020176 144.31 1499.26 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
42. Ran ENSMUSG00000029430 139.85 1452.92 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
43. Set ENSMUSG00000054766 138.36 1437.44 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
44. Hsp90aa1 ENSMUSG00000021270 136.87 1421.96 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
45. Rrm2 ENSMUSG00000020649 136.87 1421.96 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
46. Eef1b2 ENSMUSG00000025967 135.38 1406.48 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
47. Sfrp1 ENSMUSG00000031548 135.38 1406.48 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
48. Rpl41 ENSMUSG00000093674 133.90 1391.11 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
49. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 132.41 1375.63 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
50. Myl6 ENSMUSG00000090841 130.92 1360.15 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
51. Rps26 ENSMUSG00000025362 127.94 1329.19 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
52. Fkbp1a ENSMUSG00000032966 124.97 1298.33 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
53. Hmgn1 ENSMUSG00000040681 123.48 1282.85 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
54. Hnrnpc ENSMUSG00000060373 121.99 1267.37 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
55. Rpl18a ENSMUSG00000045128 121.99 1267.37 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
56. Rps5 ENSMUSG00000012848 121.99 1267.37 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
57. Ywhab ENSMUSG00000018326 121.99 1267.37 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
58. Gm14303 ENSMUSG00000081344 119.02 1236.52 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
59. Pcbp1 ENSMUSG00000051695 119.02 1236.52 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
60. Paics ENSMUSG00000029247 116.04 1205.56 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
61. U2af2 ENSMUSG00000030435 116.04 1205.56 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
62. Anp32b ENSMUSG00000028333 114.55 1190.08 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
63. Pbx1 ENSMUSG00000052534 114.55 1190.08 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
64. Rps4x ENSMUSG00000031320 114.55 1190.08 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
65. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 113.07 1174.70 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
66. Ngfrap1 113.07 1174.70 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
67. Gm5805 ENSMUSG00000061848 110.09 1143.74 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
68. Trim28 ENSMUSG00000005566 110.09 1143.74 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
69. Ago2 ENSMUSG00000036698 108.60 1128.26 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
70. Caprin1 ENSMUSG00000027184 108.60 1128.26 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
71. Ybx1 ENSMUSG00000028639 108.60 1128.26 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
72. Rpl32 ENSMUSG00000057841 107.12 1112.89 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
73. Hnrnpa2b1 ENSMUSG00000004980 105.63 1097.41 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
74. Wbp5 105.63 1097.41 WW domain binding protein 5
75. Ccnd2 ENSMUSG00000000184 104.14 1081.93 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
76. Hba-a1 ENSMUSG00000069919 102.65 1066.45 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
77. Sub1 ENSMUSG00000022205 102.65 1066.45 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
78. Col1a1 ENSMUSG00000001506 101.17 1051.07 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
79. Marcksl1 ENSMUSG00000047945 101.17 1051.07 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
80. Srsf3 ENSMUSG00000071172 101.17 1051.07 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
81. Pabpc1 ENSMUSG00000022283 99.68 1035.59 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
82. Rpl8 ENSMUSG00000003970 99.68 1035.59 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
83. Rpl37 ENSMUSG00000041841 98.19 1020.11 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
84. Gm17132 ENSMUSG00000061331 96.70 1004.63 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
85. Hba-x ENSMUSG00000055609 96.70 1004.63 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
86. Lbh ENSMUSG00000024063 96.70 1004.63 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
87. Rplp1 ENSMUSG00000007892 95.21 989.15 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
88. Rps3a1 ENSMUSG00000028081 93.73 973.77 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
89. Lamp1 ENSMUSG00000031447 92.24 958.29 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
90. Tsc22d1 ENSMUSG00000022010 92.24 958.29 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
91. Cdk1 ENSMUSG00000019942 90.75 942.81 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
92. Cox8a ENSMUSG00000035885 90.75 942.81 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
93. Eef2 ENSMUSG00000034994 90.75 942.81 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
94. Tmpo ENSMUSG00000019961 90.75 942.81 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
95. Igfbp4 ENSMUSG00000017493 89.26 927.34 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
96. Tpm4 ENSMUSG00000031799 89.26 927.34 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
97. Kpnb1 ENSMUSG00000001440 86.29 896.48 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
98. 2810417H13Rik 84.80 881.00 RIKEN cDNA 2810417H13 gene
99. Meg3 ENSMUSG00000021268 84.80 881.00 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
100. Ywhaz ENSMUSG00000022285 84.80 881.00 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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