Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s63.

Sample reads: 96,229. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3519.08 36569.86 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3510.54 36481.11 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd1 ENSMUSG00000064341 2739.59 28469.49 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Nd4 ENSMUSG00000064363 2116.57 21995.14 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Atp6 ENSMUSG00000064357 2031.22 21108.19 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Co2 ENSMUSG00000064354 1752.43 18211.04 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. H19 ENSMUSG00000000031 1354.15 14072.16 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. Actb ENSMUSG00000029580 1337.08 13894.77 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
9. mt-Co1 ENSMUSG00000064351 1100.96 11441.04 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. Mdk ENSMUSG00000027239 1095.27 11381.91 midkine [Source:MGI Symbol;Acc:MGI:96949]
11. mt-Nd3 ENSMUSG00000064360 853.45 8868.95 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd2 ENSMUSG00000064345 711.21 7390.81 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. mt-Co3 ENSMUSG00000064358 631.56 6563.10 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. Eef1a1 ENSMUSG00000037742 600.26 6237.83 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Tuba1b ENSMUSG00000023004 395.43 4109.26 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
16. mt-Rnr2 ENSMUSG00000064339 392.59 4079.75 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
17. Igf2 ENSMUSG00000048583 352.76 3665.84 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Pkm ENSMUSG00000032294 344.23 3577.20 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
19. mt-Nd5 ENSMUSG00000064367 341.38 3547.58 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Cfl1 ENSMUSG00000056201 324.31 3370.19 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. Hmga2 ENSMUSG00000056758 304.40 3163.29 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Tubb5 ENSMUSG00000001525 295.86 3074.54 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Rpl18a ENSMUSG00000045128 293.02 3045.03 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
24. Rpsa ENSMUSG00000032518 270.26 2808.51 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
25. Ubb ENSMUSG00000019505 253.19 2631.12 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
26. Rpl4 ENSMUSG00000032399 247.50 2571.99 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
27. Banf1 ENSMUSG00000024844 244.66 2542.48 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
28. Tpt1 ENSMUSG00000060126 230.43 2394.60 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
29. Gm13340 ENSMUSG00000083563 227.59 2365.09 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
30. Nedd4 ENSMUSG00000032216 216.21 2246.83 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Npm1 ENSMUSG00000057113 213.36 2217.21 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
32. Rps20 ENSMUSG00000028234 201.98 2098.95 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
33. Gm10800 ENSMUSG00000075014 190.60 1980.69 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
34. Hbb-y ENSMUSG00000052187 190.60 1980.69 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
35. Myl6 ENSMUSG00000090841 170.69 1773.79 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
36. Eif4g2 ENSMUSG00000005610 165.00 1714.66 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Grb10 ENSMUSG00000020176 162.16 1685.15 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
38. Plagl1 ENSMUSG00000019817 162.16 1685.15 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
39. Eif5a ENSMUSG00000078812 159.31 1655.53 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
40. Rrm2 ENSMUSG00000020649 159.31 1655.53 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
41. Paics ENSMUSG00000029247 153.62 1596.40 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
42. Eef2 ENSMUSG00000034994 147.93 1537.27 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
43. Hsp90ab1 ENSMUSG00000023944 145.09 1507.76 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
44. Ywhab ENSMUSG00000018326 145.09 1507.76 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
45. Rpl23 ENSMUSG00000071415 142.24 1478.14 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Chchd2 ENSMUSG00000070493 136.55 1419.01 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
47. Ngfrap1 136.55 1419.01 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
48. Tmsb10 ENSMUSG00000079523 136.55 1419.01 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
49. Col1a1 ENSMUSG00000001506 128.02 1330.37 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
50. Fkbp1a ENSMUSG00000032966 128.02 1330.37 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
51. Rps26 ENSMUSG00000025362 128.02 1330.37 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
52. Rpl32 ENSMUSG00000057841 122.33 1271.24 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
53. Tecr ENSMUSG00000031708 122.33 1271.24 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
54. Rpl39-ps ENSMUSG00000036305 116.64 1212.11 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
55. Sfrp1 ENSMUSG00000031548 116.64 1212.11 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
56. Ywhaz ENSMUSG00000022285 116.64 1212.11 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
57. Hnrnpc ENSMUSG00000060373 113.79 1182.49 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
58. Atp5g3 ENSMUSG00000018770 110.95 1152.98 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
59. Morf4l1 ENSMUSG00000062270 110.95 1152.98 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
60. Pbx1 ENSMUSG00000052534 110.95 1152.98 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
61. Hsp90aa1 ENSMUSG00000021270 108.10 1123.36 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
62. Cdk4 ENSMUSG00000006728 105.26 1093.85 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
63. Col3a1 ENSMUSG00000026043 102.41 1064.23 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
64. Gm14303 ENSMUSG00000081344 102.41 1064.23 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
65. Pcbp1 ENSMUSG00000051695 102.41 1064.23 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
66. Rpl41 ENSMUSG00000093674 102.41 1064.23 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
67. Rplp1 ENSMUSG00000007892 102.41 1064.23 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
68. Scd2 ENSMUSG00000025203 102.41 1064.23 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
69. Eef1b2 ENSMUSG00000025967 99.57 1034.72 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
70. H3f3b ENSMUSG00000016559 99.57 1034.72 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
71. Hnrnpa2b1 ENSMUSG00000004980 99.57 1034.72 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
72. Jund ENSMUSG00000071076, ENSMUSG00000110974 99.57 1034.72 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
73. Ago2 ENSMUSG00000036698 96.72 1005.10 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
74. Atp5b ENSMUSG00000025393 96.72 1005.10 ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit [Source:MGI Symbol;Acc:MGI:107801]
75. Ddx5 ENSMUSG00000020719 96.72 1005.10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
76. Fkbp4 ENSMUSG00000030357 96.72 1005.10 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
77. Ndufa12 ENSMUSG00000020022 96.72 1005.10 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
78. Trim28 ENSMUSG00000005566 96.72 1005.10 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
79. Ybx1 ENSMUSG00000028639 96.72 1005.10 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
80. Ccnd2 ENSMUSG00000000184 93.88 975.59 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
81. Igfbp4 ENSMUSG00000017493 93.88 975.59 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
82. Morf4l2 ENSMUSG00000031422 93.88 975.59 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
83. Nucks1 ENSMUSG00000026434 93.88 975.59 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
84. Gm14586 ENSMUSG00000083621 91.04 946.08 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
85. Atxn7l3b ENSMUSG00000074748 88.19 916.46 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
86. Cdkn1c ENSMUSG00000037664 88.19 916.46 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
87. Rpl37 ENSMUSG00000041841 88.19 916.46 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
88. Tfg ENSMUSG00000022757 88.19 916.46 Trk-fused gene [Source:MGI Symbol;Acc:MGI:1338041]
89. Ywhae ENSMUSG00000020849 88.19 916.46 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
90. Eif4h ENSMUSG00000040731 85.35 886.95 eukaryotic translation initiation factor 4H [Source:MGI Symbol;Acc:MGI:1341822]
91. Gm15459 ENSMUSG00000100801 85.35 886.95 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
92. Gm5805 ENSMUSG00000061848 85.35 886.95 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
93. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 85.35 886.95 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
94. Prdx1 ENSMUSG00000028691 85.35 886.95 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
95. Gm8292 ENSMUSG00000100215 82.50 857.33 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
96. Gnb2l1 Gnb2l1 82.50 857.33
97. Hspe1 ENSMUSG00000073676 82.50 857.33 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
98. Kpnb1 ENSMUSG00000001440 82.50 857.33 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
99. Pabpc1 ENSMUSG00000022283 82.50 857.33 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
100. Sub1 ENSMUSG00000022205 82.50 857.33 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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