Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s62.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3292.74 34208.25 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3202.19 33267.53 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2226.72 23133.38 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1531.13 15906.90 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 1502.31 15607.49 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 1288.29 13384.03 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. H19 ENSMUSG00000000031 1267.71 13170.23 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. Actb ENSMUSG00000029580 1247.13 12956.42 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
9. Mdk ENSMUSG00000027239 1111.30 11545.29 midkine [Source:MGI Symbol;Acc:MGI:96949]
10. mt-Co1 ENSMUSG00000064351 1012.52 10519.06 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd3 ENSMUSG00000064360 757.33 7867.90 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd2 ENSMUSG00000064345 637.97 6627.87 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Eef1a1 ENSMUSG00000037742 625.62 6499.56 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. mt-Co3 ENSMUSG00000064358 526.84 5473.34 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Pkm ENSMUSG00000032294 362.20 3762.89 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
16. Tubb5 ENSMUSG00000001525 349.85 3634.59 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
17. Cfl1 ENSMUSG00000056201 345.74 3591.89 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
18. mt-Nd5 ENSMUSG00000064367 341.62 3549.09 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Gm13340 ENSMUSG00000083563 337.51 3506.39 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Rpl4 ENSMUSG00000032399 337.51 3506.39 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
21. Hmga2 ENSMUSG00000056758 329.27 3420.78 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Igf2 ENSMUSG00000048583 325.16 3378.08 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
23. Tuba1b ENSMUSG00000023004 316.93 3292.58 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. mt-Rnr2 ENSMUSG00000064339 292.23 3035.98 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
25. Rpsa ENSMUSG00000032518 284.00 2950.47 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Tpt1 ENSMUSG00000060126 279.88 2907.67 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
27. Npm1 ENSMUSG00000057113 234.61 2437.36 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Ubb ENSMUSG00000019505 230.49 2394.56 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Nedd4 ENSMUSG00000032216 226.38 2351.86 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
30. Eif5a ENSMUSG00000078812 209.91 2180.75 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
31. Rpl18a ENSMUSG00000045128 209.91 2180.75 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
32. Eif4g2 ENSMUSG00000005610 205.80 2138.05 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Gm10800 ENSMUSG00000075014 205.80 2138.05 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
34. Rpl32 ENSMUSG00000057841 193.45 2009.75 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
35. Rps20 ENSMUSG00000028234 189.33 1966.95 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
36. Fkbp1a ENSMUSG00000032966 185.22 1924.25 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
37. Banf1 ENSMUSG00000024844 176.99 1838.75 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
38. Ndufa12 ENSMUSG00000020022 168.75 1753.14 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
39. Plagl1 ENSMUSG00000019817 168.75 1753.14 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
40. Rpl23 ENSMUSG00000071415 168.75 1753.14 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
41. Rrm2 ENSMUSG00000020649 168.75 1753.14 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
42. Hnrnpa2b1 ENSMUSG00000004980 160.52 1667.64 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
43. Paics ENSMUSG00000029247 156.41 1624.94 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
44. Rplp1 ENSMUSG00000007892 156.41 1624.94 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
45. Hsp90ab1 ENSMUSG00000023944 148.17 1539.34 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
46. Grb10 ENSMUSG00000020176 144.06 1496.64 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
47. Tmsb10 ENSMUSG00000079523 144.06 1496.64 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
48. Ywhae ENSMUSG00000020849 144.06 1496.64 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
49. Myl6 ENSMUSG00000090841 139.94 1453.84 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
50. Scd2 ENSMUSG00000025203 139.94 1453.84 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
51. Ywhab ENSMUSG00000018326 139.94 1453.84 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
52. Hsp90aa1 ENSMUSG00000021270 135.83 1411.14 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
53. Igfbp4 ENSMUSG00000017493 135.83 1411.14 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
54. Ngfrap1 135.83 1411.14 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
55. Pcbp1 ENSMUSG00000051695 135.83 1411.14 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
56. Gm14586 ENSMUSG00000083621 127.59 1325.53 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
57. Ywhaz ENSMUSG00000022285 127.59 1325.53 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
58. Col1a1 ENSMUSG00000001506 123.48 1282.83 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
59. Morf4l2 ENSMUSG00000031422 123.48 1282.83 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
60. Rps3a1 ENSMUSG00000028081 123.48 1282.83 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
61. Capns1 ENSMUSG00000001794 119.36 1240.03 calpain, small subunit 1 [Source:MGI Symbol;Acc:MGI:88266]
62. Cdk4 ENSMUSG00000006728 119.36 1240.03 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
63. Chchd2 ENSMUSG00000070493 119.36 1240.03 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
64. Hbb-y ENSMUSG00000052187 119.36 1240.03 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
65. Pfn1 ENSMUSG00000018293 119.36 1240.03 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
66. Rpl37 ENSMUSG00000041841 119.36 1240.03 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
67. Sfrp1 ENSMUSG00000031548 119.36 1240.03 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
68. Trim28 ENSMUSG00000005566 119.36 1240.03 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
69. Cdkn1c ENSMUSG00000037664 111.13 1154.53 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
70. Hmgn1 ENSMUSG00000040681 111.13 1154.53 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
71. Hspe1 ENSMUSG00000073676 111.13 1154.53 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
72. Tecr ENSMUSG00000031708 111.13 1154.53 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
73. Atp5g3 ENSMUSG00000018770 107.01 1111.73 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
74. Hnrnpc ENSMUSG00000060373 107.01 1111.73 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
75. Hnrnph1 ENSMUSG00000007850 107.01 1111.73 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
76. Prdx1 ENSMUSG00000028691 107.01 1111.73 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
77. Tsc22d1 ENSMUSG00000022010 107.01 1111.73 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
78. Cdc42 ENSMUSG00000006699 102.90 1069.03 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
79. Ddx5 ENSMUSG00000020719 102.90 1069.03 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
80. Gm14303 ENSMUSG00000081344 102.90 1069.03 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
81. Cdk1 ENSMUSG00000019942 98.78 1026.22 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
82. Eef2 ENSMUSG00000034994 98.78 1026.22 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
83. Jund ENSMUSG00000071076, ENSMUSG00000110974 98.78 1026.22 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
84. Kpnb1 ENSMUSG00000001440 98.78 1026.22 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
85. Morf4l1 ENSMUSG00000062270 98.78 1026.22 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
86. Adprh ENSMUSG00000002844 94.67 983.53 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
87. Col1a2 ENSMUSG00000029661 94.67 983.53 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
88. Ran ENSMUSG00000029430 94.67 983.53 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
89. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 94.67 983.53 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
90. Rpl41 ENSMUSG00000093674 94.67 983.53 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
91. Sub1 ENSMUSG00000022205 94.67 983.53 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
92. Tead2 ENSMUSG00000030796 94.67 983.53 TEA domain family member 2 [Source:MGI Symbol;Acc:MGI:104904]
93. Ywhaq ENSMUSG00000076432 94.67 983.53 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
94. Calm3 ENSMUSG00000019370 90.55 940.72 calmodulin 3 [Source:MGI Symbol;Acc:MGI:103249]
95. Calr ENSMUSG00000003814 90.55 940.72 calreticulin [Source:MGI Symbol;Acc:MGI:88252]
96. Eef1b2 ENSMUSG00000025967 90.55 940.72 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
97. Gm5805 ENSMUSG00000061848 90.55 940.72 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
98. Gm9844 ENSMUSG00000091955 90.55 940.72 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
99. Pabpc1 ENSMUSG00000022283 90.55 940.72 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
100. Rpl39-ps ENSMUSG00000036305 90.55 940.72 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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