Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s61.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3536.22 36738.39 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2952.57 30674.75 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2499.39 25966.58 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 1943.20 20188.23 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1805.87 18761.49 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1503.75 15622.71 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. H19 ENSMUSG00000000031 1380.16 14338.72 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. Actb ENSMUSG00000029580 995.63 10343.77 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
9. mt-Co1 ENSMUSG00000064351 981.90 10201.12 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. Mdk ENSMUSG00000027239 947.57 9844.46 midkine [Source:MGI Symbol;Acc:MGI:96949]
11. mt-Nd3 ENSMUSG00000064360 899.50 9345.06 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Eef1a1 ENSMUSG00000037742 775.91 8061.06 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. mt-Nd2 ENSMUSG00000064345 672.91 6990.98 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. mt-Co3 ENSMUSG00000064358 604.25 6277.66 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Gm10800 ENSMUSG00000075014 473.78 4922.18 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
16. Tuba1b ENSMUSG00000023004 466.92 4850.91 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
17. Igf2 ENSMUSG00000048583 425.72 4422.88 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Rpsa ENSMUSG00000032518 405.12 4208.86 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Cfl1 ENSMUSG00000056201 398.25 4137.49 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
20. Pkm ENSMUSG00000032294 391.39 4066.22 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
21. mt-Nd5 ENSMUSG00000064367 370.79 3852.20 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
22. Tubb5 ENSMUSG00000001525 357.06 3709.56 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. mt-Rnr2 ENSMUSG00000064339 315.86 3281.52 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
24. Npm1 ENSMUSG00000057113 281.52 2924.76 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Hmga2 ENSMUSG00000056758 254.06 2639.47 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
26. Rpl4 ENSMUSG00000032399 240.33 2496.83 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
27. Gm13340 ENSMUSG00000083563 233.46 2425.46 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
28. Grb10 ENSMUSG00000020176 233.46 2425.46 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
29. Tpt1 ENSMUSG00000060126 233.46 2425.46 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
30. Rps20 ENSMUSG00000028234 219.73 2282.81 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
31. Ubb ENSMUSG00000019505 219.73 2282.81 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Rpl18a ENSMUSG00000045128 205.99 2140.06 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
33. Banf1 ENSMUSG00000024844 199.13 2068.80 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
34. Plagl1 ENSMUSG00000019817 199.13 2068.80 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
35. Cdk4 ENSMUSG00000006728 192.26 1997.42 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
36. Eif5a ENSMUSG00000078812 192.26 1997.42 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
37. Ngfrap1 185.39 1926.05 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
38. Paics ENSMUSG00000029247 185.39 1926.05 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
39. Ywhab ENSMUSG00000018326 185.39 1926.05 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
40. Eif4g2 ENSMUSG00000005610 178.53 1854.78 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
41. Fkbp1a ENSMUSG00000032966 178.53 1854.78 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
42. Rpl23 ENSMUSG00000071415 178.53 1854.78 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
43. Col3a1 ENSMUSG00000026043 164.79 1712.03 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
44. Chchd2 ENSMUSG00000070493 157.93 1640.76 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
45. Hbb-y ENSMUSG00000052187 157.93 1640.76 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
46. Rrm2 ENSMUSG00000020649 157.93 1640.76 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
47. Tecr ENSMUSG00000031708 157.93 1640.76 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
48. Gm9844 ENSMUSG00000091955 151.06 1569.39 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
49. Trim28 ENSMUSG00000005566 151.06 1569.39 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
50. Gm5805 ENSMUSG00000061848 144.20 1498.12 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
51. Hmgn1 ENSMUSG00000040681 144.20 1498.12 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
52. Rpl37 ENSMUSG00000041841 144.20 1498.12 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
53. Anp32b ENSMUSG00000028333 137.33 1426.74 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
54. Myl6 ENSMUSG00000090841 137.33 1426.74 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
55. Rps26 ENSMUSG00000025362 137.33 1426.74 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
56. Rps3a1 ENSMUSG00000028081 137.33 1426.74 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
57. Hnrnpa2b1 ENSMUSG00000004980 130.46 1355.37 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
58. Ndufa12 ENSMUSG00000020022 130.46 1355.37 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
59. Pbx1 ENSMUSG00000052534 130.46 1355.37 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
60. Eef1b2 ENSMUSG00000025967 123.60 1284.10 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
61. Eef2 ENSMUSG00000034994 123.60 1284.10 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
62. Lbh ENSMUSG00000024063 123.60 1284.10 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
63. Rpl32 ENSMUSG00000057841 123.60 1284.10 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
64. Sfrp1 ENSMUSG00000031548 123.60 1284.10 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
65. Cdkn1c ENSMUSG00000037664 116.73 1212.73 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
66. Gm14586 ENSMUSG00000083621 116.73 1212.73 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
67. Hsp90ab1 ENSMUSG00000023944 116.73 1212.73 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
68. Hspe1 ENSMUSG00000073676 116.73 1212.73 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
69. Morf4l2 ENSMUSG00000031422 116.73 1212.73 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
70. Nedd4 ENSMUSG00000032216 116.73 1212.73 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
71. Rpl41 ENSMUSG00000093674 116.73 1212.73 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
72. Gm17132 ENSMUSG00000061331 109.86 1141.35 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
73. Morf4l1 ENSMUSG00000062270 109.86 1141.35 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
74. Sub1 ENSMUSG00000022205 109.86 1141.35 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
75. Fn1 ENSMUSG00000026193 103.00 1070.08 fibronectin 1 [Source:MGI Symbol;Acc:MGI:95566]
76. Gm15459 ENSMUSG00000100801 103.00 1070.08 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
77. Kpnb1 ENSMUSG00000001440 103.00 1070.08 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
78. Ran ENSMUSG00000029430 103.00 1070.08 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
79. Rplp1 ENSMUSG00000007892 103.00 1070.08 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
80. Scd2 ENSMUSG00000025203 103.00 1070.08 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
81. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 103.00 1070.08 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
82. Crabp1 ENSMUSG00000032291 96.13 998.71 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
83. Fkbp4 ENSMUSG00000030357 96.13 998.71 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
84. Igfbp4 ENSMUSG00000017493 96.13 998.71 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
85. Sod1 ENSMUSG00000022982 96.13 998.71 superoxide dismutase 1, soluble [Source:MGI Symbol;Acc:MGI:98351]
86. Tubb2b ENSMUSG00000045136 96.13 998.71 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
87. Calr ENSMUSG00000003814 89.26 927.34 calreticulin [Source:MGI Symbol;Acc:MGI:88252]
88. Cd24a ENSMUSG00000047139 89.26 927.34 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
89. Cox6c ENSMUSG00000014313 89.26 927.34 cytochrome c oxidase subunit 6C [Source:MGI Symbol;Acc:MGI:104614]
90. Gm8292 ENSMUSG00000100215 89.26 927.34 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
91. Hnrnph1 ENSMUSG00000007850 89.26 927.34 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
92. Hnrnpk ENSMUSG00000021546 89.26 927.34 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
93. Ilf3 ENSMUSG00000032178 89.26 927.34 interleukin enhancer binding factor 3 [Source:MGI Symbol;Acc:MGI:1339973]
94. Mapre1 ENSMUSG00000027479 89.26 927.34 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
95. Nnat ENSMUSG00000067786 89.26 927.34 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
96. Pabpc1 ENSMUSG00000022283 89.26 927.34 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
97. Pfn1 ENSMUSG00000018293 89.26 927.34 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
98. Rpl39-ps ENSMUSG00000036305 89.26 927.34 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
99. Rps4x ENSMUSG00000031320 89.26 927.34 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
100. Son ENSMUSG00000022961 89.26 927.34 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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