Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s60.

Sample reads: 96,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3837.12 39868.77 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3432.71 35666.84 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2466.35 25626.08 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 1827.90 18992.40 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1771.33 18404.62 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1486.50 15445.16 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1159.88 12051.48 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1149.59 11944.57 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Nd3 ENSMUSG00000064360 776.68 8069.93 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Actb ENSMUSG00000029580 725.25 7535.55 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Co3 ENSMUSG00000064358 711.10 7388.53 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Eef1a1 ENSMUSG00000037742 689.24 7161.40 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Mdk ENSMUSG00000027239 637.81 6627.03 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Igf2 ENSMUSG00000048583 502.79 5224.13 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. mt-Nd2 ENSMUSG00000064345 480.28 4990.25 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. Hmga2 ENSMUSG00000056758 359.41 3734.37 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. Gm13340 ENSMUSG00000083563 343.98 3574.05 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Tubb5 ENSMUSG00000001525 339.48 3527.29 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
19. mt-Rnr2 ENSMUSG00000064339 333.05 3460.48 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
20. Rpsa ENSMUSG00000032518 316.97 3293.41 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Cfl1 ENSMUSG00000056201 294.47 3059.63 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Pkm ENSMUSG00000032294 291.26 3026.27 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
23. Tuba1b ENSMUSG00000023004 284.18 2952.71 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Npm1 ENSMUSG00000057113 277.11 2879.25 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Gm10800 ENSMUSG00000075014 260.39 2705.53 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
26. Rpl4 ENSMUSG00000032399 217.32 2258.02 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
27. Ubb ENSMUSG00000019505 207.03 2151.10 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. mt-Nd5 ENSMUSG00000064367 206.39 2144.45 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
29. Col1a1 ENSMUSG00000001506 196.10 2037.53 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
30. Eif4g2 ENSMUSG00000005610 192.88 2004.08 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
31. Nedd4 ENSMUSG00000032216 190.31 1977.38 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
32. Tpt1 ENSMUSG00000060126 189.67 1970.73 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
33. Hsp90ab1 ENSMUSG00000023944 169.10 1757.00 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Col3a1 ENSMUSG00000026043 162.02 1683.43 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
35. Rps20 ENSMUSG00000028234 159.45 1656.73 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
36. Myl6 ENSMUSG00000090841 155.59 1616.62 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
37. Ywhab ENSMUSG00000018326 155.59 1616.62 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
38. Chchd2 ENSMUSG00000070493 154.31 1603.32 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Rpl23 ENSMUSG00000071415 151.09 1569.87 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
40. Eif5a ENSMUSG00000078812 150.45 1563.22 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
41. Rpl18a ENSMUSG00000045128 149.16 1549.81 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
42. Hsp90aa1 ENSMUSG00000021270 148.52 1543.17 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
43. Grb10 ENSMUSG00000020176 147.88 1536.52 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
44. Trim28 ENSMUSG00000005566 147.88 1536.52 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
45. Plagl1 ENSMUSG00000019817 140.16 1456.30 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
46. Rpl41 ENSMUSG00000093674 139.52 1449.65 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
47. Paics ENSMUSG00000029247 138.23 1436.25 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
48. Fkbp1a ENSMUSG00000032966 137.59 1429.60 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
49. Hnrnpa2b1 ENSMUSG00000004980 136.31 1416.30 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
50. Pbx1 ENSMUSG00000052534 125.38 1302.73 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
51. U2af2 ENSMUSG00000030435 124.73 1295.98 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
52. Cdk4 ENSMUSG00000006728 124.09 1289.33 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
53. Rpl37 ENSMUSG00000041841 122.16 1269.28 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
54. Rps26 ENSMUSG00000025362 122.16 1269.28 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
55. Ran ENSMUSG00000029430 121.52 1262.63 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
56. Hmgn1 ENSMUSG00000040681 118.30 1229.17 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
57. Ngfrap1 118.30 1229.17 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
58. Banf1 ENSMUSG00000024844 117.66 1222.52 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
59. Sfrp1 ENSMUSG00000031548 116.37 1209.12 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
60. Rplp1 ENSMUSG00000007892 113.80 1182.41 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
61. Igfbp4 ENSMUSG00000017493 113.16 1175.76 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
62. Cdkn1c ENSMUSG00000037664 111.23 1155.71 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
63. Ddx5 ENSMUSG00000020719 111.23 1155.71 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
64. Meg3 ENSMUSG00000021268 111.23 1155.71 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
65. Atp5g3 ENSMUSG00000018770 109.30 1135.66 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
66. Eef2 ENSMUSG00000034994 108.66 1129.01 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
67. Rpl32 ENSMUSG00000057841 108.66 1129.01 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
68. Eef1b2 ENSMUSG00000025967 108.02 1122.36 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
69. Rrm2 ENSMUSG00000020649 108.02 1122.36 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
70. Cdk1 ENSMUSG00000019942 107.37 1115.60 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
71. Set ENSMUSG00000054766 107.37 1115.60 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
72. Ago2 ENSMUSG00000036698 104.16 1082.25 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
73. Ywhae ENSMUSG00000020849 104.16 1082.25 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
74. Acta2 ENSMUSG00000035783 103.51 1075.50 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
75. Ndufa12 ENSMUSG00000020022 103.51 1075.50 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
76. Tmsb10 ENSMUSG00000079523 97.09 1008.79 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
77. Kpnb1 ENSMUSG00000001440 96.44 1002.04 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
78. Pabpc1 ENSMUSG00000022283 95.80 995.39 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
79. Anp32b ENSMUSG00000028333 95.16 988.74 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
80. Lbh ENSMUSG00000024063 94.51 981.99 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
81. Srsf3 ENSMUSG00000071172 94.51 981.99 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
82. Morf4l1 ENSMUSG00000062270 93.87 975.34 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
83. Scd2 ENSMUSG00000025203 93.87 975.34 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
84. Ccnd2 ENSMUSG00000000184 92.58 961.93 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
85. Hnrnpc ENSMUSG00000060373 91.94 955.28 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
86. Morf4l2 ENSMUSG00000031422 91.94 955.28 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
87. Rps4x ENSMUSG00000031320 91.94 955.28 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
88. Ywhaz ENSMUSG00000022285 91.94 955.28 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
89. Gm17132 ENSMUSG00000061331 91.30 948.63 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
90. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 91.30 948.63 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
91. Tecr ENSMUSG00000031708 90.01 935.23 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
92. Rpl39-ps ENSMUSG00000036305 89.37 928.58 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
93. Caprin1 ENSMUSG00000027184 88.73 921.93 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
94. Pcbp1 ENSMUSG00000051695 88.73 921.93 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
95. Tpm4 ENSMUSG00000031799 88.73 921.93 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
96. Rps3a1 ENSMUSG00000028081 88.08 915.18 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
97. Top2a ENSMUSG00000020914 88.08 915.18 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
98. Hnrnpa0 ENSMUSG00000007836 87.44 908.53 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
99. H3f3b ENSMUSG00000016559 85.51 888.47 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
100. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 84.23 875.17 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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