Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s59.

Sample reads: 96,253. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3943.64 40971.74 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3727.19 38722.97 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2375.69 24681.81 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2344.01 24352.67 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2270.10 23584.80 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2048.37 21281.17 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. Actb ENSMUSG00000029580 1388.46 14425.16 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
8. H19 ENSMUSG00000000031 1034.74 10750.25 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Co1 ENSMUSG00000064351 976.67 10146.94 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. Mdk ENSMUSG00000027239 871.08 9049.93 midkine [Source:MGI Symbol;Acc:MGI:96949]
11. mt-Nd3 ENSMUSG00000064360 871.08 9049.93 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd2 ENSMUSG00000064345 696.87 7240.01 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Eef1a1 ENSMUSG00000037742 659.91 6856.02 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Gm10800 ENSMUSG00000075014 512.09 5320.27 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
15. mt-Co3 ENSMUSG00000064358 501.53 5210.56 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. mt-Rnr2 ENSMUSG00000064339 496.25 5155.70 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
17. Igf2 ENSMUSG00000048583 364.27 3784.52 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Gm13340 ENSMUSG00000083563 316.76 3290.92 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Tubb5 ENSMUSG00000001525 290.36 3016.64 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
20. Cfl1 ENSMUSG00000056201 285.08 2961.79 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. Rpsa ENSMUSG00000032518 285.08 2961.79 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
22. mt-Nd5 ENSMUSG00000064367 274.52 2852.08 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Tuba1b ENSMUSG00000023004 263.97 2742.47 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Hmga2 ENSMUSG00000056758 253.41 2632.76 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
25. Nedd4 ENSMUSG00000032216 253.41 2632.76 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. Rpl4 ENSMUSG00000032399 253.41 2632.76 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
27. Ubb ENSMUSG00000019505 227.01 2358.48 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Eif5a ENSMUSG00000078812 221.73 2303.62 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
29. Ngfrap1 216.45 2248.77 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
30. Myl6 ENSMUSG00000090841 211.17 2193.91 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
31. Pkm ENSMUSG00000032294 200.61 2084.20 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
32. Npm1 ENSMUSG00000057113 195.33 2029.35 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
33. Tpt1 ENSMUSG00000060126 190.05 1974.49 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
34. Chchd2 ENSMUSG00000070493 168.94 1755.17 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
35. Fkbp1a ENSMUSG00000032966 168.94 1755.17 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
36. Rrm2 ENSMUSG00000020649 168.94 1755.17 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
37. Banf1 ENSMUSG00000024844 163.66 1700.32 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
38. Cdk4 ENSMUSG00000006728 163.66 1700.32 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
39. Col1a1 ENSMUSG00000001506 158.38 1645.46 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
40. Eif4g2 ENSMUSG00000005610 158.38 1645.46 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
41. Rps20 ENSMUSG00000028234 158.38 1645.46 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
42. Sfrp1 ENSMUSG00000031548 158.38 1645.46 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
43. Eef1b2 ENSMUSG00000025967 153.10 1590.61 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Hsp90ab1 ENSMUSG00000023944 147.82 1535.75 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
45. Pbx1 ENSMUSG00000052534 137.26 1426.04 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
46. Hnrnpc ENSMUSG00000060373 131.98 1371.18 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
47. Hsp90aa1 ENSMUSG00000021270 131.98 1371.18 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
48. Trim28 ENSMUSG00000005566 126.70 1316.33 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
49. Ddx5 ENSMUSG00000020719 121.42 1261.47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
50. Kpnb1 ENSMUSG00000001440 121.42 1261.47 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
51. Sfpq ENSMUSG00000028820 121.42 1261.47 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
52. Ywhab ENSMUSG00000018326 121.42 1261.47 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
53. Ywhae ENSMUSG00000020849 121.42 1261.47 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
54. Ago2 ENSMUSG00000036698 116.14 1206.62 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
55. Cox8a ENSMUSG00000035885 116.14 1206.62 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
56. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 116.14 1206.62 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
57. Paics ENSMUSG00000029247 116.14 1206.62 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
58. Rps3a1 ENSMUSG00000028081 116.14 1206.62 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
59. Rps26 ENSMUSG00000025362 110.87 1151.86 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
60. Set ENSMUSG00000054766 110.87 1151.86 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
61. Tecr ENSMUSG00000031708 110.87 1151.86 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
62. 2810417H13Rik 105.59 1097.01 RIKEN cDNA 2810417H13 gene
63. Acta2 ENSMUSG00000035783 105.59 1097.01 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
64. Elavl1 ENSMUSG00000040028 105.59 1097.01 ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Source:MGI Symbol;Acc:MGI:1100851]
65. Gm14586 ENSMUSG00000083621 105.59 1097.01 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
66. Grb10 ENSMUSG00000020176 105.59 1097.01 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
67. Ran ENSMUSG00000029430 105.59 1097.01 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
68. Rpl23 ENSMUSG00000071415 105.59 1097.01 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
69. Rpl37 ENSMUSG00000041841 105.59 1097.01 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
70. Tpm1 ENSMUSG00000032366 105.59 1097.01 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
71. Wbp5 105.59 1097.01 WW domain binding protein 5
72. Col3a1 ENSMUSG00000026043 100.31 1042.15 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
73. Gm5963 ENSMUSG00000052192 100.31 1042.15 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
74. Hnrnpa2b1 ENSMUSG00000004980 100.31 1042.15 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
75. Lbh ENSMUSG00000024063 100.31 1042.15 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
76. Meg3 ENSMUSG00000021268 100.31 1042.15 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
77. Pcbp1 ENSMUSG00000051695 100.31 1042.15 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
78. Plagl1 ENSMUSG00000019817 100.31 1042.15 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
79. Rplp1 ENSMUSG00000007892 100.31 1042.15 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
80. Scd2 ENSMUSG00000025203 100.31 1042.15 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
81. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 100.31 1042.15 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
82. Atp5g3 ENSMUSG00000018770 95.03 987.30 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
83. Eef2 ENSMUSG00000034994 95.03 987.30 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
84. Fscn1 ENSMUSG00000029581 95.03 987.30 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
85. Lamp1 ENSMUSG00000031447 95.03 987.30 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
86. Morf4l1 ENSMUSG00000062270 95.03 987.30 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
87. Rpl32 ENSMUSG00000057841 95.03 987.30 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
88. Col1a2 ENSMUSG00000029661 89.75 932.44 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
89. Crabp1 ENSMUSG00000032291 89.75 932.44 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
90. Hbb-y ENSMUSG00000052187 89.75 932.44 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
91. Igfbp4 ENSMUSG00000017493 89.75 932.44 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
92. Morf4l2 ENSMUSG00000031422 89.75 932.44 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
93. Nucks1 ENSMUSG00000026434 89.75 932.44 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
94. Pfn1 ENSMUSG00000018293 89.75 932.44 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
95. Rpl41 ENSMUSG00000093674 89.75 932.44 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
96. Tmsb10 ENSMUSG00000079523 89.75 932.44 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
97. Gpc3 ENSMUSG00000055653 84.47 877.59 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
98. Rpl18a ENSMUSG00000045128 84.47 877.59 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
99. Rps15 ENSMUSG00000063457 84.47 877.59 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
100. Sparc ENSMUSG00000018593 84.47 877.59 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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