Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s58.

Sample reads: 96,251. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3562.99 37017.51 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3100.26 32210.00 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2533.42 26320.84 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 1943.45 20191.38 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1769.93 18388.60 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. Actb ENSMUSG00000029580 1469.15 15263.66 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
7. H19 ENSMUSG00000000031 1330.34 13821.50 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co2 ENSMUSG00000064354 1191.52 12379.24 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. mt-Co1 ENSMUSG00000064351 1075.84 11177.39 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. Mdk ENSMUSG00000027239 902.31 9374.51 midkine [Source:MGI Symbol;Acc:MGI:96949]
11. mt-Nd3 ENSMUSG00000064360 751.93 7812.14 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd2 ENSMUSG00000064345 717.22 7451.52 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. mt-Co3 ENSMUSG00000064358 647.82 6730.49 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. Eef1a1 ENSMUSG00000037742 636.25 6610.29 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Cfl1 ENSMUSG00000056201 404.88 4206.48 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
16. Gm10800 ENSMUSG00000075014 393.32 4086.38 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
17. Pkm ENSMUSG00000032294 370.18 3845.97 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
18. Igf2 ENSMUSG00000048583 358.61 3725.76 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. Tuba1b ENSMUSG00000023004 323.91 3365.25 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. Tubb5 ENSMUSG00000001525 323.91 3365.25 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
21. Ubb ENSMUSG00000019505 312.34 3245.04 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
22. mt-Nd5 ENSMUSG00000064367 312.34 3245.04 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Rpl18a ENSMUSG00000045128 289.20 3004.63 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
24. Ngfrap1 277.64 2884.53 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
25. Rpl4 ENSMUSG00000032399 266.07 2764.32 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
26. mt-Rnr2 ENSMUSG00000064339 266.07 2764.32 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
27. Rps20 ENSMUSG00000028234 242.93 2523.91 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
28. Fkbp1a ENSMUSG00000032966 231.36 2403.70 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
29. Npm1 ENSMUSG00000057113 219.79 2283.50 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
30. Rpl23 ENSMUSG00000071415 219.79 2283.50 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
31. Rpl32 ENSMUSG00000057841 219.79 2283.50 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
32. Gm13340 ENSMUSG00000083563 208.23 2163.40 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
33. Tpt1 ENSMUSG00000060126 208.23 2163.40 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
34. Hmga2 ENSMUSG00000056758 196.66 2043.19 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
35. Banf1 ENSMUSG00000024844 185.09 1922.98 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
36. Myl6 ENSMUSG00000090841 185.09 1922.98 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
37. Rpsa ENSMUSG00000032518 185.09 1922.98 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
38. Tmsb10 ENSMUSG00000079523 185.09 1922.98 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
39. Acta2 ENSMUSG00000035783 173.52 1802.78 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
40. Hsp90ab1 ENSMUSG00000023944 173.52 1802.78 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
41. Nedd4 ENSMUSG00000032216 173.52 1802.78 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
42. Col3a1 ENSMUSG00000026043 161.95 1682.57 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
43. Crabp1 ENSMUSG00000032291 161.95 1682.57 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
44. Tecr ENSMUSG00000031708 161.95 1682.57 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
45. Trim28 ENSMUSG00000005566 161.95 1682.57 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
46. Hnrnpa2b1 ENSMUSG00000004980 150.39 1562.47 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
47. Col1a1 ENSMUSG00000001506 138.82 1442.26 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
48. Paics ENSMUSG00000029247 138.82 1442.26 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
49. Tead2 ENSMUSG00000030796 138.82 1442.26 TEA domain family member 2 [Source:MGI Symbol;Acc:MGI:104904]
50. Gm15459 ENSMUSG00000100801 127.25 1322.06 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
51. Gm9844 ENSMUSG00000091955 127.25 1322.06 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
52. Hspe1 ENSMUSG00000073676 127.25 1322.06 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
53. Igfbp4 ENSMUSG00000017493 127.25 1322.06 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
54. Marcks ENSMUSG00000069662 127.25 1322.06 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
55. Pfn1 ENSMUSG00000018293 127.25 1322.06 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
56. Plagl1 ENSMUSG00000019817 127.25 1322.06 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
57. Rpl41 ENSMUSG00000093674 127.25 1322.06 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
58. Rrm2 ENSMUSG00000020649 127.25 1322.06 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
59. Tpm1 ENSMUSG00000032366 127.25 1322.06 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
60. mt-Rnr1 ENSMUSG00000064337 127.25 1322.06 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
61. Atp5b ENSMUSG00000025393 115.68 1201.85 ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit [Source:MGI Symbol;Acc:MGI:107801]
62. Calr ENSMUSG00000003814 115.68 1201.85 calreticulin [Source:MGI Symbol;Acc:MGI:88252]
63. Cdk1 ENSMUSG00000019942 115.68 1201.85 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
64. Eef1b2 ENSMUSG00000025967 115.68 1201.85 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
65. Eef2 ENSMUSG00000034994 115.68 1201.85 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
66. Eif4g2 ENSMUSG00000005610 115.68 1201.85 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
67. Gm5963 ENSMUSG00000052192 115.68 1201.85 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
68. Gm8292 ENSMUSG00000100215 115.68 1201.85 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
69. Grb10 ENSMUSG00000020176 115.68 1201.85 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
70. H3f3b ENSMUSG00000016559 115.68 1201.85 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
71. Hbb-y ENSMUSG00000052187 115.68 1201.85 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
72. Hmgn1 ENSMUSG00000040681 115.68 1201.85 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
73. Nnat ENSMUSG00000067786 115.68 1201.85 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
74. Pabpc1 ENSMUSG00000022283 115.68 1201.85 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
75. Rps26 ENSMUSG00000025362 115.68 1201.85 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
76. Sfrp1 ENSMUSG00000031548 115.68 1201.85 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
77. Ssbp3 ENSMUSG00000061887 115.68 1201.85 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
78. Atrx ENSMUSG00000031229 104.11 1081.65 ATRX, chromatin remodeler [Source:MGI Symbol;Acc:MGI:103067]
79. Cdc42 ENSMUSG00000006699 104.11 1081.65 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
80. Chchd2 ENSMUSG00000070493 104.11 1081.65 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
81. Cox8a ENSMUSG00000035885 104.11 1081.65 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
82. Cse1l ENSMUSG00000002718 104.11 1081.65 chromosome segregation 1-like (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1339951]
83. Eif4h ENSMUSG00000040731 104.11 1081.65 eukaryotic translation initiation factor 4H [Source:MGI Symbol;Acc:MGI:1341822]
84. Eif5a ENSMUSG00000078812 104.11 1081.65 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
85. Fkbp4 ENSMUSG00000030357 104.11 1081.65 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
86. Fth1 ENSMUSG00000024661 104.11 1081.65 ferritin heavy polypeptide 1 [Source:MGI Symbol;Acc:MGI:95588]
87. Hnrnpc ENSMUSG00000060373 104.11 1081.65 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
88. Lamp1 ENSMUSG00000031447 104.11 1081.65 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
89. Lbh ENSMUSG00000024063 104.11 1081.65 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
90. Morf4l1 ENSMUSG00000062270 104.11 1081.65 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
91. Pbx1 ENSMUSG00000052534 104.11 1081.65 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
92. Rplp1 ENSMUSG00000007892 104.11 1081.65 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
93. Rps4x ENSMUSG00000031320 104.11 1081.65 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
94. Scd2 ENSMUSG00000025203 104.11 1081.65 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
95. Srsf3 ENSMUSG00000071172 104.11 1081.65 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
96. Sulf2 ENSMUSG00000006800 104.11 1081.65 sulfatase 2 [Source:MGI Symbol;Acc:MGI:1919293]
97. Tra2b ENSMUSG00000022858 104.11 1081.65 transformer 2 beta [Source:MGI Symbol;Acc:MGI:106016]
98. Ywhae ENSMUSG00000020849 104.11 1081.65 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
99. Ywhaz ENSMUSG00000022285 104.11 1081.65 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
100. 2010107E04Rik 92.55 961.54 RIKEN cDNA 2010107E04 gene, transcript variant X1
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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