Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s57.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3337.15 34676.16 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3013.78 31316.03 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2121.29 22042.22 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 1784.99 18547.74 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1668.57 17338.03 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1487.49 15456.43 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1319.34 13709.19 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1164.12 12096.31 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. Actb ENSMUSG00000029580 1034.77 10752.24 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. Gm10800 ENSMUSG00000075014 944.23 9811.45 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
11. mt-Nd3 ENSMUSG00000064360 905.43 9408.28 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. H19 ENSMUSG00000000031 776.08 8064.21 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. Mdk ENSMUSG00000027239 763.15 7929.85 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. mt-Nd2 ENSMUSG00000064345 724.34 7526.58 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. mt-Co3 ENSMUSG00000064358 685.54 7123.41 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Eef1a1 ENSMUSG00000037742 633.80 6585.78 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Igf2 ENSMUSG00000048583 595.00 6182.61 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. mt-Nd5 ENSMUSG00000064367 452.71 4704.09 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Gm13340 ENSMUSG00000083563 400.97 4166.46 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Cfl1 ENSMUSG00000056201 310.43 3225.66 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. Npm1 ENSMUSG00000057113 284.56 2956.85 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Pkm ENSMUSG00000032294 284.56 2956.85 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
23. Tpt1 ENSMUSG00000060126 284.56 2956.85 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
24. Hmga2 ENSMUSG00000056758 258.69 2688.03 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
25. Ngfrap1 245.76 2553.68 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
26. Rpsa ENSMUSG00000032518 245.76 2553.68 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
27. Sfrp1 ENSMUSG00000031548 245.76 2553.68 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
28. Tubb5 ENSMUSG00000001525 232.82 2419.22 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
29. mt-Rnr1 ENSMUSG00000064337 232.82 2419.22 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
30. Col1a1 ENSMUSG00000001506 194.02 2016.05 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
31. Eif4g2 ENSMUSG00000005610 194.02 2016.05 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Hsp90ab1 ENSMUSG00000023944 194.02 2016.05 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Fkbp1a ENSMUSG00000032966 181.09 1881.70 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
34. Rps20 ENSMUSG00000028234 181.09 1881.70 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
35. Tuba1b ENSMUSG00000023004 181.09 1881.70 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
36. Acta2 ENSMUSG00000035783 168.15 1747.24 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
37. Gpc3 ENSMUSG00000055653 168.15 1747.24 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
38. Pbx1 ENSMUSG00000052534 168.15 1747.24 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
39. Tuba1a ENSMUSG00000072235 168.15 1747.24 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
40. Banf1 ENSMUSG00000024844 155.22 1612.88 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
41. Meg3 ENSMUSG00000021268 155.22 1612.88 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
42. Son ENSMUSG00000022961 155.22 1612.88 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
43. Ubb ENSMUSG00000019505 155.22 1612.88 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
44. Ybx1 ENSMUSG00000028639 155.22 1612.88 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
45. Eef1b2 ENSMUSG00000025967 142.28 1478.42 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
46. Hmgn1 ENSMUSG00000040681 142.28 1478.42 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
47. Myl6 ENSMUSG00000090841 142.28 1478.42 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
48. Paics ENSMUSG00000029247 142.28 1478.42 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
49. Rpl8 ENSMUSG00000003970 142.28 1478.42 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
50. Rps4x ENSMUSG00000031320 142.28 1478.42 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
51. Set ENSMUSG00000054766 142.28 1478.42 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
52. Wbp5 142.28 1478.42 WW domain binding protein 5
53. Anp32b ENSMUSG00000028333 129.35 1344.07 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
54. Atp5g3 ENSMUSG00000018770 129.35 1344.07 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
55. Chchd2 ENSMUSG00000070493 129.35 1344.07 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
56. Grb10 ENSMUSG00000020176 129.35 1344.07 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
57. Hsp90aa1 ENSMUSG00000021270 129.35 1344.07 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
58. Nedd4 ENSMUSG00000032216 129.35 1344.07 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
59. Plagl1 ENSMUSG00000019817 129.35 1344.07 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
60. Tecr ENSMUSG00000031708 129.35 1344.07 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
61. Tmsb4x ENSMUSG00000049775 129.35 1344.07 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
62. Tpm4 ENSMUSG00000031799 129.35 1344.07 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
63. Ywhab ENSMUSG00000018326 129.35 1344.07 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
64. Ccnd2 ENSMUSG00000000184 116.41 1209.61 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
65. Cdk4 ENSMUSG00000006728 116.41 1209.61 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
66. Col3a1 ENSMUSG00000026043 116.41 1209.61 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
67. Hbb-y ENSMUSG00000052187 116.41 1209.61 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
68. Morf4l2 ENSMUSG00000031422 116.41 1209.61 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
69. Pcbp1 ENSMUSG00000051695 116.41 1209.61 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
70. Rpl23 ENSMUSG00000071415 116.41 1209.61 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
71. Rpl4 ENSMUSG00000032399 116.41 1209.61 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
72. Rps15 ENSMUSG00000063457 116.41 1209.61 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
73. Rps26 ENSMUSG00000025362 116.41 1209.61 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
74. Scd2 ENSMUSG00000025203 116.41 1209.61 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
75. Top1 ENSMUSG00000070544 116.41 1209.61 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
76. Top2a ENSMUSG00000020914 116.41 1209.61 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
77. Capns1 ENSMUSG00000001794 103.48 1075.26 calpain, small subunit 1 [Source:MGI Symbol;Acc:MGI:88266]
78. Cdk1 ENSMUSG00000019942 103.48 1075.26 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
79. Cdkn1c ENSMUSG00000037664 103.48 1075.26 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
80. Cks1b ENSMUSG00000028044 103.48 1075.26 CDC28 protein kinase 1b [Source:MGI Symbol;Acc:MGI:1889208]
81. Col1a2 ENSMUSG00000029661 103.48 1075.26 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
82. Crabp1 ENSMUSG00000032291 103.48 1075.26 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
83. Elp2 ENSMUSG00000024271 103.48 1075.26 elongator acetyltransferase complex subunit 2 [Source:MGI Symbol;Acc:MGI:1889642]
84. Gas1 ENSMUSG00000052957 103.48 1075.26 growth arrest specific 1 [Source:MGI Symbol;Acc:MGI:95655]
85. Gm8292 ENSMUSG00000100215 103.48 1075.26 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
86. Gnai2 ENSMUSG00000032562 103.48 1075.26 guanine nucleotide binding protein (G protein), alpha inhibiting 2 [Source:MGI Symbol;Acc:MGI:95772]
87. Igfbp4 ENSMUSG00000017493 103.48 1075.26 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
88. Marcks ENSMUSG00000069662 103.48 1075.26 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
89. Ran ENSMUSG00000029430 103.48 1075.26 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
90. Rpl18a ENSMUSG00000045128 103.48 1075.26 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
91. Snrpb ENSMUSG00000027404 103.48 1075.26 small nuclear ribonucleoprotein B [Source:MGI Symbol;Acc:MGI:98342]
92. Stmn1 ENSMUSG00000028832 103.48 1075.26 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
93. Trim28 ENSMUSG00000005566 103.48 1075.26 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
94. U2af2 ENSMUSG00000030435 103.48 1075.26 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
95. Uba1 ENSMUSG00000001924 103.48 1075.26 ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
96. Ago2 ENSMUSG00000036698 90.54 940.80 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
97. Canx ENSMUSG00000020368 90.54 940.80 calnexin [Source:MGI Symbol;Acc:MGI:88261]
98. Cltc ENSMUSG00000047126 90.54 940.80 clathrin, heavy polypeptide (Hc) [Source:MGI Symbol;Acc:MGI:2388633]
99. Gm15459 ENSMUSG00000100801 90.54 940.80 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
100. Gm5805 ENSMUSG00000061848 90.54 940.80 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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