Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s56.

Sample reads: 96,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3611.70 37528.53 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3413.43 35468.35 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd4 ENSMUSG00000064363 2508.68 26067.25 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Atp6 ENSMUSG00000064357 2498.24 25958.77 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd1 ENSMUSG00000064341 2349.01 24408.15 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2277.01 23660.01 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1401.48 14562.53 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Gm10800 ENSMUSG00000075014 846.31 8793.86 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
9. mt-Nd3 ENSMUSG00000064360 835.88 8685.48 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Actb ENSMUSG00000029580 812.92 8446.91 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Co3 ENSMUSG00000064358 785.79 8165.00 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. mt-Nd2 ENSMUSG00000064345 727.35 7557.76 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. mt-Rnr2 ENSMUSG00000064339 681.43 7080.62 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
14. H19 ENSMUSG00000000031 679.35 7059.01 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
15. Mdk ENSMUSG00000027239 609.43 6332.48 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Eef1a1 ENSMUSG00000037742 603.17 6267.43 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Igf2 ENSMUSG00000048583 469.59 4879.43 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. mt-Nd5 ENSMUSG00000064367 357.93 3719.19 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Gm13340 ENSMUSG00000083563 348.54 3621.62 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Rpsa ENSMUSG00000032518 340.19 3534.85 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Tubb5 ENSMUSG00000001525 285.93 2971.05 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
22. Hmga2 ENSMUSG00000056758 277.58 2884.28 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. Npm1 ENSMUSG00000057113 243.15 2526.53 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Pkm ENSMUSG00000032294 229.58 2385.53 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
25. Tuba1b ENSMUSG00000023004 219.14 2277.04 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Nedd4 ENSMUSG00000032216 216.01 2244.52 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Hsp90ab1 ENSMUSG00000023944 211.84 2201.19 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
28. Rpl4 ENSMUSG00000032399 189.92 1973.43 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
29. Cfl1 ENSMUSG00000056201 188.88 1962.62 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
30. Eif5a ENSMUSG00000078812 184.71 1919.29 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
31. Eif4g2 ENSMUSG00000005610 180.53 1875.86 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Hbb-y ENSMUSG00000052187 173.23 1800.00 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
33. Col3a1 ENSMUSG00000026043 164.88 1713.24 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
34. Myl6 ENSMUSG00000090841 164.88 1713.24 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
35. Rpl23 ENSMUSG00000071415 163.84 1702.43 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
36. Tpt1 ENSMUSG00000060126 159.66 1659.00 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
37. Ubb ENSMUSG00000019505 159.66 1659.00 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
38. Sfrp1 ENSMUSG00000031548 158.62 1648.19 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
39. Col1a1 ENSMUSG00000001506 156.53 1626.48 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
40. Grb10 ENSMUSG00000020176 152.36 1583.15 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
41. Chchd2 ENSMUSG00000070493 151.31 1572.24 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
42. Ngfrap1 150.27 1561.43 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
43. Ywhab ENSMUSG00000018326 145.05 1507.19 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
44. Rps20 ENSMUSG00000028234 137.75 1431.34 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
45. Pbx1 ENSMUSG00000052534 134.62 1398.81 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
46. Eef1b2 ENSMUSG00000025967 133.57 1387.90 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
47. Peg3 ENSMUSG00000002265 130.44 1355.38 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
48. Rps26 ENSMUSG00000025362 126.27 1312.05 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
49. Atp5g3 ENSMUSG00000018770 124.18 1290.33 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
50. Paics ENSMUSG00000029247 123.14 1279.53 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
51. Rps4x ENSMUSG00000031320 120.01 1247.00 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
52. Set ENSMUSG00000054766 120.01 1247.00 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
53. Hmgn1 ENSMUSG00000040681 118.96 1236.09 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
54. Ran ENSMUSG00000029430 118.96 1236.09 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
55. Rpl41 ENSMUSG00000093674 117.92 1225.29 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
56. Hsp90aa1 ENSMUSG00000021270 116.88 1214.48 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
57. Crabp1 ENSMUSG00000032291 114.79 1192.76 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
58. Ago2 ENSMUSG00000036698 113.75 1181.96 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
59. U2af2 ENSMUSG00000030435 113.75 1181.96 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
60. Rpl18a ENSMUSG00000045128 112.70 1171.05 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
61. Trim28 ENSMUSG00000005566 111.66 1160.24 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
62. Hnrnpc ENSMUSG00000060373 110.62 1149.43 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
63. Ybx1 ENSMUSG00000028639 110.62 1149.43 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
64. Wbp5 109.57 1138.52 WW domain binding protein 5
65. Acta2 ENSMUSG00000035783 107.48 1116.81 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
66. Banf1 ENSMUSG00000024844 107.48 1116.81 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
67. Gm5805 ENSMUSG00000061848 103.31 1073.48 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
68. Lamp1 ENSMUSG00000031447 102.27 1062.67 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
69. Pabpc1 ENSMUSG00000022283 101.22 1051.76 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
70. Eef2 ENSMUSG00000034994 100.18 1040.95 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
71. Rrm2 ENSMUSG00000020649 100.18 1040.95 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
72. Meg3 ENSMUSG00000021268 96.01 997.62 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
73. Gas1 ENSMUSG00000052957 94.96 986.71 growth arrest specific 1 [Source:MGI Symbol;Acc:MGI:95655]
74. Rps3a1 ENSMUSG00000028081 94.96 986.71 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
75. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 94.96 986.71 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
76. Fkbp1a ENSMUSG00000032966 93.92 975.91 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
77. Sparc ENSMUSG00000018593 93.92 975.91 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
78. Tpm1 ENSMUSG00000032366 93.92 975.91 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
79. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 92.88 965.10 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
80. Sub1 ENSMUSG00000022205 92.88 965.10 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
81. Hba-a1 ENSMUSG00000069919 91.83 954.19 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
82. Igfbp4 ENSMUSG00000017493 90.79 943.38 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
83. Rpl32 ENSMUSG00000057841 90.79 943.38 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
84. Gm17132 ENSMUSG00000061331 89.74 932.47 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
85. Marcks ENSMUSG00000069662 89.74 932.47 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
86. Rpl8 ENSMUSG00000003970 89.74 932.47 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
87. Rps9 ENSMUSG00000006333 89.74 932.47 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
88. Rps5 ENSMUSG00000012848 88.70 921.67 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
89. Cdk4 ENSMUSG00000006728 87.66 910.86 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
90. Gpc3 ENSMUSG00000055653 87.66 910.86 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
91. Hnrnpa2b1 ENSMUSG00000004980 87.66 910.86 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
92. Marcksl1 ENSMUSG00000047945 86.61 899.95 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
93. Hnrnph1 ENSMUSG00000007850 85.57 889.14 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
94. Igfbp5 ENSMUSG00000026185 85.57 889.14 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
95. Pcbp1 ENSMUSG00000051695 85.57 889.14 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
96. H3f3b ENSMUSG00000016559 84.53 878.34 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
97. mt-Rnr1 ENSMUSG00000064337 83.48 867.43 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
98. Gm14303 ENSMUSG00000081344 82.44 856.62 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
99. Hba-x ENSMUSG00000055609 82.44 856.62 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
100. Rpl37 ENSMUSG00000041841 82.44 856.62 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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