Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s55.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4316.74 44846.25 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3572.28 37112.12 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd1 ENSMUSG00000064341 2531.34 26297.88 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Nd4 ENSMUSG00000064363 2530.61 26290.30 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Atp6 ENSMUSG00000064357 2451.16 25464.90 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Co2 ENSMUSG00000064354 2439.39 25342.62 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1454.36 15109.22 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Mdk ENSMUSG00000027239 959.28 9965.88 midkine [Source:MGI Symbol;Acc:MGI:96949]
9. mt-Nd3 ENSMUSG00000064360 901.16 9362.08 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Actb ENSMUSG00000029580 867.32 9010.51 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Co3 ENSMUSG00000064358 814.36 8460.32 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. mt-Nd2 ENSMUSG00000064345 809.21 8406.82 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. H19 ENSMUSG00000000031 731.96 7604.27 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. Eef1a1 ENSMUSG00000037742 670.17 6962.34 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. mt-Rnr2 ENSMUSG00000064339 595.13 6182.76 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
16. Gm10800 ENSMUSG00000075014 581.89 6045.21 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
17. Igf2 ENSMUSG00000048583 431.09 4478.56 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Gm13340 ENSMUSG00000083563 364.88 3790.71 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. mt-Nd5 ENSMUSG00000064367 346.49 3599.66 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Rpsa ENSMUSG00000032518 345.75 3591.97 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Tuba1b ENSMUSG00000023004 307.50 3194.59 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Tubb5 ENSMUSG00000001525 279.54 2904.12 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Hmga2 ENSMUSG00000056758 240.55 2499.05 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
24. Npm1 ENSMUSG00000057113 225.84 2346.23 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Nedd4 ENSMUSG00000032216 221.43 2300.42 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. Pkm ENSMUSG00000032294 212.60 2208.68 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Tpt1 ENSMUSG00000060126 194.21 2017.63 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Cfl1 ENSMUSG00000056201 191.27 1987.09 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
29. Hsp90ab1 ENSMUSG00000023944 189.80 1971.82 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
30. Ubb ENSMUSG00000019505 189.80 1971.82 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Sfrp1 ENSMUSG00000031548 188.32 1956.44 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
32. Eif4g2 ENSMUSG00000005610 172.88 1796.04 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Rpl23 ENSMUSG00000071415 168.46 1750.12 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
34. Rps26 ENSMUSG00000025362 166.99 1734.85 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
35. Rps20 ENSMUSG00000028234 165.52 1719.57 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
36. Grb10 ENSMUSG00000020176 164.78 1711.89 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
37. Rpl4 ENSMUSG00000032399 159.63 1658.38 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
38. Rpl18a ENSMUSG00000045128 153.01 1589.61 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
39. Eef1b2 ENSMUSG00000025967 147.86 1536.11 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
40. Ngfrap1 146.39 1520.83 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
41. Chchd2 ENSMUSG00000070493 135.36 1406.24 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
42. Col3a1 ENSMUSG00000026043 134.62 1398.56 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
43. Eif5a ENSMUSG00000078812 129.47 1345.05 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
44. Crabp1 ENSMUSG00000032291 128.74 1337.47 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
45. Hnrnpa2b1 ENSMUSG00000004980 125.06 1299.24 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
46. Ywhab ENSMUSG00000018326 124.32 1291.55 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
47. Hbb-y ENSMUSG00000052187 123.59 1283.97 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
48. Hmgn1 ENSMUSG00000040681 118.44 1230.46 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
49. Peg3 ENSMUSG00000002265 118.44 1230.46 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
50. Trim28 ENSMUSG00000005566 118.44 1230.46 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
51. Banf1 ENSMUSG00000024844 116.97 1215.19 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
52. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 116.23 1207.50 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
53. Col1a1 ENSMUSG00000001506 114.02 1184.54 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
54. Myl6 ENSMUSG00000090841 113.29 1176.96 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
55. Paics ENSMUSG00000029247 112.55 1169.27 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
56. Hsp90aa1 ENSMUSG00000021270 108.87 1131.04 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
57. H3f3b ENSMUSG00000016559 108.14 1123.46 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
58. Ran ENSMUSG00000029430 108.14 1123.46 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
59. Rps3a1 ENSMUSG00000028081 105.93 1100.50 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
60. Hnrnpc ENSMUSG00000060373 104.46 1085.23 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
61. Rps4x ENSMUSG00000031320 104.46 1085.23 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
62. Wbp5 102.99 1069.95 WW domain binding protein 5
63. Pbx1 ENSMUSG00000052534 102.25 1062.27 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
64. Rrm2 ENSMUSG00000020649 102.25 1062.27 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
65. Atp5g3 ENSMUSG00000018770 101.52 1054.68 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
66. Col1a2 ENSMUSG00000029661 100.05 1039.41 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
67. U2af2 ENSMUSG00000030435 99.31 1031.72 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
68. Gpc3 ENSMUSG00000055653 97.84 1016.45 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
69. Igfbp4 ENSMUSG00000017493 97.10 1008.76 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
70. Fkbp1a ENSMUSG00000032966 96.37 1001.18 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
71. Gm5805 ENSMUSG00000061848 96.37 1001.18 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
72. Marcks ENSMUSG00000069662 95.63 993.49 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
73. Ywhae ENSMUSG00000020849 95.63 993.49 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
74. Rplp1 ENSMUSG00000007892 94.16 978.22 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
75. Cdk4 ENSMUSG00000006728 93.43 970.64 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
76. Ybx1 ENSMUSG00000028639 93.43 970.64 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
77. Anp32b ENSMUSG00000028333 92.69 962.95 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
78. Eef2 ENSMUSG00000034994 91.96 955.36 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
79. Gm14586 ENSMUSG00000083621 91.96 955.36 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
80. Rps5 ENSMUSG00000012848 90.48 939.99 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
81. Gas1 ENSMUSG00000052957 89.75 932.41 growth arrest specific 1 [Source:MGI Symbol;Acc:MGI:95655]
82. Rpl37 ENSMUSG00000041841 89.01 924.72 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
83. Rps15 ENSMUSG00000063457 86.07 894.17 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
84. Set ENSMUSG00000054766 86.07 894.17 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
85. Tmsb10 ENSMUSG00000079523 86.07 894.17 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
86. Rpl8 ENSMUSG00000003970 85.33 886.49 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
87. Igfbp5 ENSMUSG00000026185 84.60 878.90 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
88. Tecr ENSMUSG00000031708 84.60 878.90 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
89. Cdk1 ENSMUSG00000019942 83.86 871.21 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
90. Hnrnpa0 ENSMUSG00000007836 83.86 871.21 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
91. Ddx5 ENSMUSG00000020719 83.13 863.63 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
92. Pcbp1 ENSMUSG00000051695 83.13 863.63 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
93. mt-Rnr1 ENSMUSG00000064337 83.13 863.63 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
94. Gm14303 ENSMUSG00000081344 82.39 855.94 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
95. Hnrnph1 ENSMUSG00000007850 82.39 855.94 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
96. Meg3 ENSMUSG00000021268 82.39 855.94 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
97. Rps9 ENSMUSG00000006333 82.39 855.94 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
98. Tsc22d1 ENSMUSG00000022010 81.66 848.36 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
99. Cox8a ENSMUSG00000035885 80.92 840.67 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
100. Gm17132 ENSMUSG00000061331 80.18 832.98 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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