Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E11_5_slice_3, section s54.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 5225.13 54292.88 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd4 ENSMUSG00000064363 3754.49 39011.87 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
3. mt-Atp6 ENSMUSG00000064357 1986.06 20636.60 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1821.12 18922.75 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co3 ENSMUSG00000064358 1273.64 13234.04 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
6. Mdk ENSMUSG00000027239 1083.51 11258.45 midkine [Source:MGI Symbol;Acc:MGI:96949]
7. mt-Nd2 ENSMUSG00000064345 1044.57 10853.84 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
8. mt-Co2 ENSMUSG00000064354 1037.70 10782.45 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. Gm10800 ENSMUSG00000075014 1010.21 10496.81 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
10. mt-Co1 ENSMUSG00000064351 998.75 10377.74 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. Gm13340 ENSMUSG00000083563 820.08 8521.22 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
12. Pkm ENSMUSG00000032294 728.45 7569.12 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
13. mt-Nd3 ENSMUSG00000064360 616.20 6402.76 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Ptma ENSMUSG00000026238 563.52 5855.38 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
15. Tuba1b ENSMUSG00000023004 540.61 5617.33 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
16. H19 ENSMUSG00000000031 536.03 5569.74 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
17. mt-Rnr2 ENSMUSG00000064339 517.70 5379.28 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
18. Rpl4 ENSMUSG00000032399 426.07 4427.18 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
19. mt-Nd5 ENSMUSG00000064367 384.84 3998.77 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Eef1a1 ENSMUSG00000037742 361.93 3760.71 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
21. Tpt1 ENSMUSG00000060126 336.74 3498.97 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
22. Ubb ENSMUSG00000019505 311.54 3237.13 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
23. Rpl18a ENSMUSG00000045128 300.08 3118.05 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
24. Gm17132 ENSMUSG00000061331 286.34 2975.28 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
25. Tubb5 ENSMUSG00000001525 286.34 2975.28 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Hmga2 ENSMUSG00000056758 238.23 2475.38 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
27. Rpl23 ENSMUSG00000071415 235.94 2451.59 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
28. Npm1 ENSMUSG00000057113 224.49 2332.61 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
29. Rps20 ENSMUSG00000028234 208.46 2166.05 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
30. Gm10073 ENSMUSG00000060019 206.16 2142.15 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
31. Jund ENSMUSG00000071076, ENSMUSG00000110974 206.16 2142.15 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
32. Gm8292 ENSMUSG00000100215 194.71 2023.18 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
33. Igf2 ENSMUSG00000048583 192.42 1999.38 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
34. Hsp90aa1 ENSMUSG00000021270 190.13 1975.59 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
35. Myl6 ENSMUSG00000090841 183.26 1904.20 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
36. Rpl37 ENSMUSG00000041841 178.68 1856.61 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
37. Rps26 ENSMUSG00000025362 171.80 1785.13 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
38. Paics ENSMUSG00000029247 169.51 1761.33 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
39. Gm14303 ENSMUSG00000081344 167.22 1737.54 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
40. Cfl1 ENSMUSG00000056201 164.93 1713.74 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
41. Hbb-y ENSMUSG00000052187 164.93 1713.74 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
42. Chchd2 ENSMUSG00000070493 162.64 1689.95 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
43. Sfrp1 ENSMUSG00000031548 158.06 1642.36 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
44. Crabp1 ENSMUSG00000032291 155.77 1618.56 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
45. Banf1 ENSMUSG00000024844 153.48 1594.77 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
46. Eef1b2 ENSMUSG00000025967 151.19 1570.97 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
47. Eif4g2 ENSMUSG00000005610 151.19 1570.97 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
48. Hsp90ab1 ENSMUSG00000023944 148.90 1547.18 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
49. Hnrnpc ENSMUSG00000060373 146.61 1523.38 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
50. Rpl32 ENSMUSG00000057841 142.02 1475.69 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
51. Gm15459 ENSMUSG00000100801 137.44 1428.10 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
52. Rps16-ps2 ENSMUSG00000060419 135.15 1404.31 ribosomal protein S16, pseudogene 2 [Source:MGI Symbol;Acc:MGI:3704259]
53. Gm5963 ENSMUSG00000052192 132.86 1380.51 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
54. Peg3 ENSMUSG00000002265 132.86 1380.51 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
55. Rps4x ENSMUSG00000031320 132.86 1380.51 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
56. Ndufa12 ENSMUSG00000020022 130.57 1356.72 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
57. Adprh ENSMUSG00000002844 128.28 1332.92 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
58. Rps5 ENSMUSG00000012848 128.28 1332.92 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
59. Rps9 ENSMUSG00000006333 125.99 1309.13 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
60. Srsf3 ENSMUSG00000071172 125.99 1309.13 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
61. Atp5g3 ENSMUSG00000018770 123.70 1285.33 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
62. Rpl3-ps1 ENSMUSG00000084349 123.70 1285.33 ribosomal protein L3, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3644217]
63. Sparc ENSMUSG00000018593 123.70 1285.33 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
64. Chd3 ENSMUSG00000018474 121.41 1261.54 chromodomain helicase DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1344395]
65. Ddx39b ENSMUSG00000019432 121.41 1261.54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
66. Eif4h ENSMUSG00000040731 119.12 1237.74 eukaryotic translation initiation factor 4H [Source:MGI Symbol;Acc:MGI:1341822]
67. Hnrnpk ENSMUSG00000021546 119.12 1237.74 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
68. Ywhae ENSMUSG00000020849 119.12 1237.74 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
69. Actb ENSMUSG00000029580 116.83 1213.95 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
70. Rpl22 ENSMUSG00000028936 114.54 1190.15 ribosomal protein L22 [Source:MGI Symbol;Acc:MGI:99262]
71. Rpl26 ENSMUSG00000060938 114.54 1190.15 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
72. Rpl8 ENSMUSG00000003970 112.25 1166.36 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
73. U2af2 ENSMUSG00000030435 112.25 1166.36 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
74. Gm21897 ENSMUSG00000094472 109.95 1142.46 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
75. Gm14586 ENSMUSG00000083621 107.66 1118.67 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
76. Rpl41 ENSMUSG00000093674 107.66 1118.67 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
77. Igfbp5 ENSMUSG00000026185 103.08 1071.08 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
78. Kpnb1 ENSMUSG00000001440 103.08 1071.08 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
79. Top2a ENSMUSG00000020914 103.08 1071.08 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
80. Trim28 ENSMUSG00000005566 103.08 1071.08 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
81. Cdk4 ENSMUSG00000006728 100.79 1047.28 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
82. Hnrnpa0 ENSMUSG00000007836 100.79 1047.28 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
83. Rpl28-ps1 ENSMUSG00000058603 100.79 1047.28 ribosomal protein L28, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3705349]
84. Uqcrq ENSMUSG00000044894 100.79 1047.28 ubiquinol-cytochrome c reductase, complex III subunit VII [Source:MGI Symbol;Acc:MGI:107807]
85. Ywhab ENSMUSG00000018326 100.79 1047.28 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
86. Cct4 ENSMUSG00000007739 98.50 1023.49 chaperonin containing Tcp1, subunit 4 (delta) [Source:MGI Symbol;Acc:MGI:104689]
87. Peg10 ENSMUSG00000092035 98.50 1023.49 paternally expressed 10 [Source:MGI Symbol;Acc:MGI:2157785]
88. Rpl13 ENSMUSG00000000740 98.50 1023.49 ribosomal protein L13 [Source:MGI Symbol;Acc:MGI:105922]
89. Rps8 ENSMUSG00000047675 98.50 1023.49 ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98166]
90. Grb10 ENSMUSG00000020176 96.21 999.69 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
91. Uba1 ENSMUSG00000001924 96.21 999.69 ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
92. Rpl13a ENSMUSG00000074129 93.92 975.90 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
93. Rplp1 ENSMUSG00000007892 93.92 975.90 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
94. Gm4617 ENSMUSG00000096544 91.63 952.10 predicted pseudogene 4617 [Source:MGI Symbol;Acc:MGI:3704225]
95. Hspe1 ENSMUSG00000073676 91.63 952.10 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
96. Gm9844 ENSMUSG00000091955 89.34 928.31 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
97. Mcm7 ENSMUSG00000029730 89.34 928.31 minichromosome maintenance complex component 7 [Source:MGI Symbol;Acc:MGI:1298398]
98. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 89.34 928.31 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
99. Tecr ENSMUSG00000031708 89.34 928.31 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
100. Wbp5 89.34 928.31 WW domain binding protein 5
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA