Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s53.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4514.17 46897.35 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 3375.32 35065.93 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2698.15 28030.86 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 1908.99 19832.34 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1674.46 17395.83 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1545.57 16056.80 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1344.85 13971.54 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1091.30 11337.43 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. Gm10800 ENSMUSG00000075014 1056.44 10975.27 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
10. mt-Co3 ENSMUSG00000064358 890.58 9252.16 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. mt-Nd3 ENSMUSG00000064360 828.25 8604.62 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd2 ENSMUSG00000064345 794.44 8253.37 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Mdk ENSMUSG00000027239 660.27 6859.49 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. mt-Rnr2 ENSMUSG00000064339 541.95 5630.27 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
15. Pkm ENSMUSG00000032294 519.77 5399.85 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
16. Actb ENSMUSG00000029580 502.87 5224.28 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
17. Igf2 ENSMUSG00000048583 454.27 4719.37 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Eef1a1 ENSMUSG00000037742 451.10 4686.44 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. Gm13340 ENSMUSG00000083563 440.54 4576.73 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. mt-Nd5 ENSMUSG00000064367 357.08 3709.68 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. Rpl4 ENSMUSG00000032399 331.72 3446.21 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
22. Rpl18a ENSMUSG00000045128 289.46 3007.18 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
23. Tpt1 ENSMUSG00000060126 282.07 2930.40 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
24. Cfl1 ENSMUSG00000056201 279.96 2908.48 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Hbb-y ENSMUSG00000052187 269.39 2798.67 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
26. Npm1 ENSMUSG00000057113 237.70 2469.45 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Rpsa ENSMUSG00000032518 222.91 2315.79 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Ubb ENSMUSG00000019505 218.68 2271.85 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Nedd4 ENSMUSG00000032216 206.01 2140.22 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
30. Tubb5 ENSMUSG00000001525 190.16 1975.56 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
31. Rpl41 ENSMUSG00000093674 182.76 1898.68 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
32. Tuba1b ENSMUSG00000023004 180.65 1876.76 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
33. Rps20 ENSMUSG00000028234 177.48 1843.83 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
34. Itga6 ENSMUSG00000027111 172.20 1788.97 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
35. Hmga2 ENSMUSG00000056758 163.75 1701.19 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
36. Hsp90ab1 ENSMUSG00000023944 163.75 1701.19 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Jund ENSMUSG00000071076, ENSMUSG00000110974 159.52 1657.24 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
38. Paics ENSMUSG00000029247 158.47 1646.33 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
39. Rpl23 ENSMUSG00000071415 155.30 1613.40 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
40. Rpl32 ENSMUSG00000057841 154.24 1602.39 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
41. Hsp90aa1 ENSMUSG00000021270 148.96 1547.53 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
42. Trim28 ENSMUSG00000005566 148.96 1547.53 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
43. Eef1b2 ENSMUSG00000025967 147.90 1536.52 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Rpl37 ENSMUSG00000041841 147.90 1536.52 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
45. Gm15459 ENSMUSG00000100801 140.51 1459.75 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
46. Ndufa12 ENSMUSG00000020022 138.39 1437.72 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
47. Fkbp1a ENSMUSG00000032966 134.17 1393.88 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
48. Ngfrap1 134.17 1393.88 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
49. Chchd2 ENSMUSG00000070493 133.11 1382.87 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
50. Tecr ENSMUSG00000031708 132.05 1371.86 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
51. Myl6 ENSMUSG00000090841 128.89 1339.03 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
52. Rps4x ENSMUSG00000031320 127.83 1328.02 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
53. Tmsb10 ENSMUSG00000079523 121.49 1262.15 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
54. Cdk4 ENSMUSG00000006728 119.38 1240.23 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
55. Rpl39-ps ENSMUSG00000036305 117.26 1218.20 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
56. Tsc22d1 ENSMUSG00000022010 117.26 1218.20 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
57. Rps26 ENSMUSG00000025362 116.21 1207.30 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
58. Gm17132 ENSMUSG00000061331 115.15 1196.28 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
59. Crabp1 ENSMUSG00000032291 111.98 1163.35 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
60. Gm14586 ENSMUSG00000083621 110.93 1152.44 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
61. U2af2 ENSMUSG00000030435 107.76 1119.51 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
62. Sfrp1 ENSMUSG00000031548 106.70 1108.50 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
63. Eef2 ENSMUSG00000034994 105.64 1097.49 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
64. Hnrnpa2b1 ENSMUSG00000004980 105.64 1097.49 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
65. Eif4g2 ENSMUSG00000005610 104.59 1086.58 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
66. Hnrnpc ENSMUSG00000060373 104.59 1086.58 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
67. Morf4l2 ENSMUSG00000031422 104.59 1086.58 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
68. Peg3 ENSMUSG00000002265 104.59 1086.58 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
69. Scd2 ENSMUSG00000025203 101.42 1053.64 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
70. Atp5g3 ENSMUSG00000018770 100.36 1042.63 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
71. Grb10 ENSMUSG00000020176 100.36 1042.63 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
72. H3f3b ENSMUSG00000016559 98.25 1020.71 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
73. Rps5 ENSMUSG00000012848 97.19 1009.70 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
74. Ywhab ENSMUSG00000018326 97.19 1009.70 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
75. Capns1 ENSMUSG00000001794 96.14 998.79 calpain, small subunit 1 [Source:MGI Symbol;Acc:MGI:88266]
76. Lamp1 ENSMUSG00000031447 96.14 998.79 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
77. Rplp1 ENSMUSG00000007892 94.02 976.77 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
78. Ran ENSMUSG00000029430 91.91 954.85 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
79. Uba1 ENSMUSG00000001924 91.91 954.85 ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
80. Lbh ENSMUSG00000024063 90.85 943.83 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
81. Fkbp4 ENSMUSG00000030357 89.80 932.92 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
82. Hba-x ENSMUSG00000055609 89.80 932.92 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
83. Banf1 ENSMUSG00000024844 88.74 921.91 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
84. Eif5a ENSMUSG00000078812 88.74 921.91 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
85. Col3a1 ENSMUSG00000026043 87.68 910.90 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
86. Gm5805 ENSMUSG00000061848 87.68 910.90 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
87. Gm8292 ENSMUSG00000100215 87.68 910.90 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
88. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 85.57 888.98 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
89. Hba-a1 ENSMUSG00000069919 85.57 888.98 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
90. Top2a ENSMUSG00000020914 85.57 888.98 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
91. Elp2 ENSMUSG00000024271 82.40 856.05 elongator acetyltransferase complex subunit 2 [Source:MGI Symbol;Acc:MGI:1889642]
92. Pcdh18 ENSMUSG00000037892 81.35 845.14 protocadherin 18 [Source:MGI Symbol;Acc:MGI:1920423]
93. Rpl8 ENSMUSG00000003970 80.29 834.13 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
94. Srsf3 ENSMUSG00000071172 80.29 834.13 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
95. Adprh ENSMUSG00000002844 79.23 823.11 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
96. Rps9 ENSMUSG00000006333 79.23 823.11 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
97. Gm5963 ENSMUSG00000052192 78.18 812.21 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
98. Hmgn1 ENSMUSG00000040681 78.18 812.21 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
99. Igfbp4 ENSMUSG00000017493 78.18 812.21 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
100. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 78.18 812.21 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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