Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s52.

Sample reads: 96,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4360.71 45309.40 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3585.27 37252.29 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd1 ENSMUSG00000064341 3048.25 31672.45 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Co2 ENSMUSG00000064354 2893.71 30066.72 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd4 ENSMUSG00000064363 2581.88 26826.69 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Atp6 ENSMUSG00000064357 2512.33 26104.04 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co1 ENSMUSG00000064351 1466.45 15236.96 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 1013.88 10534.59 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Nd2 ENSMUSG00000064345 939.92 9766.12 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Rnr2 ENSMUSG00000064339 901.84 9370.45 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
11. Gm10800 ENSMUSG00000075014 878.10 9123.79 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
12. mt-Co3 ENSMUSG00000064358 800.83 8320.92 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. H19 ENSMUSG00000000031 756.68 7862.19 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. Mdk ENSMUSG00000027239 714.73 7426.31 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Actb ENSMUSG00000029580 614.29 6382.70 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. Eef1a1 ENSMUSG00000037742 593.31 6164.71 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Gm13340 ENSMUSG00000083563 408.97 4249.35 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. mt-Nd5 ENSMUSG00000064367 399.04 4146.17 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Igf2 ENSMUSG00000048583 356.54 3704.58 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
20. Hbb-y ENSMUSG00000052187 355.99 3698.87 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
21. Rpsa ENSMUSG00000032518 327.84 3406.38 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
22. Npm1 ENSMUSG00000057113 273.75 2844.36 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Hmga2 ENSMUSG00000056758 249.47 2592.09 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
24. Pkm ENSMUSG00000032294 226.29 2351.24 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
25. Tuba1b ENSMUSG00000023004 226.29 2351.24 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Nedd4 ENSMUSG00000032216 223.53 2322.56 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Rpl4 ENSMUSG00000032399 192.07 1995.68 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
28. Hba-x ENSMUSG00000055609 187.65 1949.75 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
29. Cfl1 ENSMUSG00000056201 185.44 1926.79 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
30. Ubb ENSMUSG00000019505 185.44 1926.79 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Hsp90ab1 ENSMUSG00000023944 184.34 1915.36 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Hba-a1 ENSMUSG00000069919 173.85 1806.37 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
33. Tpt1 ENSMUSG00000060126 171.65 1783.51 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
34. Rps26 ENSMUSG00000025362 170.54 1771.97 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
35. Rpl18a ENSMUSG00000045128 169.44 1760.54 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
36. Rps20 ENSMUSG00000028234 168.89 1754.83 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
37. Tubb5 ENSMUSG00000001525 168.34 1749.12 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
38. Itga6 ENSMUSG00000027111 166.13 1726.15 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
39. Rpl23 ENSMUSG00000071415 156.74 1628.59 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
40. Eef1b2 ENSMUSG00000025967 139.64 1450.91 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
41. mt-Rnr1 ENSMUSG00000064337 138.53 1439.38 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
42. Tsc22d1 ENSMUSG00000022010 137.98 1433.66 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
43. Pbx1 ENSMUSG00000052534 136.88 1422.23 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
44. Set ENSMUSG00000054766 134.67 1399.27 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
45. Banf1 ENSMUSG00000024844 134.12 1393.56 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
46. Chchd2 ENSMUSG00000070493 128.60 1336.20 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
47. Eif4g2 ENSMUSG00000005610 127.49 1324.67 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
48. Gm17132 ENSMUSG00000061331 122.53 1273.13 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
49. Eif5a ENSMUSG00000078812 119.77 1244.45 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
50. Wbp5 117.01 1215.78 WW domain binding protein 5
51. Grb10 ENSMUSG00000020176 114.25 1187.10 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
52. Ywhab ENSMUSG00000018326 113.70 1181.39 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
53. Gm5805 ENSMUSG00000061848 112.04 1164.14 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
54. Paics ENSMUSG00000029247 111.49 1158.42 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
55. Sfrp1 ENSMUSG00000031548 109.83 1141.17 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
56. Rps5 ENSMUSG00000012848 109.28 1135.46 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
57. Hsp90aa1 ENSMUSG00000021270 108.73 1129.75 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
58. Myl6 ENSMUSG00000090841 108.73 1129.75 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
59. Peg3 ENSMUSG00000002265 107.07 1112.50 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
60. Rplp1 ENSMUSG00000007892 103.21 1072.39 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
61. Trim28 ENSMUSG00000005566 102.10 1060.86 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
62. Hnrnpc ENSMUSG00000060373 101.55 1055.14 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
63. Rrm2 ENSMUSG00000020649 98.24 1020.75 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
64. Cdk4 ENSMUSG00000006728 97.69 1015.04 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
65. Rps3a1 ENSMUSG00000028081 97.69 1015.04 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
66. Lbh ENSMUSG00000024063 96.59 1003.61 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
67. Hmgn1 ENSMUSG00000040681 95.48 992.07 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
68. Ybx1 ENSMUSG00000028639 95.48 992.07 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
69. Ago2 ENSMUSG00000036698 94.93 986.36 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
70. Bmyc ENSMUSG00000049086 94.93 986.36 brain expressed myelocytomatosis oncogene [Source:MGI Symbol;Acc:MGI:88184]
71. Eef2 ENSMUSG00000034994 93.83 974.93 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
72. Pabpc1 ENSMUSG00000022283 93.83 974.93 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
73. Rpl37 ENSMUSG00000041841 93.83 974.93 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
74. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 92.72 963.40 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
75. Ndufa12 ENSMUSG00000020022 91.62 951.97 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
76. Atp5g3 ENSMUSG00000018770 91.07 946.25 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
77. Pcbp1 ENSMUSG00000051695 89.96 934.72 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
78. Fkbp1a ENSMUSG00000032966 89.41 929.00 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
79. Gpc3 ENSMUSG00000055653 89.41 929.00 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
80. Lamp1 ENSMUSG00000031447 88.86 923.29 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
81. Col3a1 ENSMUSG00000026043 88.31 917.57 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
82. Hnrnpa2b1 ENSMUSG00000004980 86.65 900.33 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
83. Ngfrap1 86.65 900.33 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
84. Gm14586 ENSMUSG00000083621 86.10 894.61 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
85. U2af2 ENSMUSG00000030435 85.55 888.90 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
86. Rps4x ENSMUSG00000031320 85.00 883.18 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
87. Hba-a2 ENSMUSG00000069917 84.44 877.36 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
88. Rpl8 ENSMUSG00000003970 84.44 877.36 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
89. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 82.79 860.22 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
90. Sparc ENSMUSG00000018593 82.79 860.22 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
91. Ran ENSMUSG00000029430 80.58 837.26 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
92. Tecr ENSMUSG00000031708 80.58 837.26 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
93. Morf4l2 ENSMUSG00000031422 80.03 831.54 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
94. Rps9 ENSMUSG00000006333 80.03 831.54 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
95. Gm14303 ENSMUSG00000081344 79.48 825.83 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
96. Rpl32 ENSMUSG00000057841 78.92 820.01 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
97. Crabp1 ENSMUSG00000032291 78.37 814.29 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
98. Sub1 ENSMUSG00000022205 78.37 814.29 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
99. Morf4l1 ENSMUSG00000062270 77.82 808.58 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
100. Rpl39-ps ENSMUSG00000036305 76.72 797.15 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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