Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s50.

Sample reads: 96,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4341.59 45114.40 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3210.05 33356.33 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2522.21 26208.83 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2319.00 24097.23 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd4 ENSMUSG00000064363 2254.44 23426.37 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Nd1 ENSMUSG00000064341 2048.50 21286.41 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1437.04 14932.59 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 994.70 10336.14 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Rnr2 ENSMUSG00000064339 844.68 8777.25 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. mt-Co3 ENSMUSG00000064358 786.94 8177.26 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. mt-Nd2 ENSMUSG00000064345 752.85 7823.03 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. Mdk ENSMUSG00000027239 713.29 7411.95 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. H19 ENSMUSG00000000031 698.75 7260.86 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. Actb ENSMUSG00000029580 687.84 7147.49 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Gm10800 ENSMUSG00000075014 678.29 7048.26 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
16. Eef1a1 ENSMUSG00000037742 650.10 6755.33 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Hbb-y ENSMUSG00000052187 647.83 6731.74 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Igf2 ENSMUSG00000048583 440.07 4572.86 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. Gm13340 ENSMUSG00000083563 409.61 4256.35 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. mt-Nd5 ENSMUSG00000064367 383.70 3987.11 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. Hmga2 ENSMUSG00000056758 380.97 3958.74 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Hba-a1 ENSMUSG00000069919 355.96 3698.86 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
23. Hba-x ENSMUSG00000055609 331.42 3443.86 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
24. Rpsa ENSMUSG00000032518 329.14 3420.17 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
25. Tubb5 ENSMUSG00000001525 276.41 2872.24 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Cfl1 ENSMUSG00000056201 263.68 2739.96 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Npm1 ENSMUSG00000057113 248.68 2584.09 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Tuba1b ENSMUSG00000023004 239.13 2484.85 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. Tpt1 ENSMUSG00000060126 237.76 2470.62 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
30. Ubb ENSMUSG00000019505 230.04 2390.40 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Nedd4 ENSMUSG00000032216 224.58 2333.66 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
32. Pkm ENSMUSG00000032294 210.94 2191.92 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
33. Hsp90ab1 ENSMUSG00000023944 180.03 1870.73 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Hba-a2 ENSMUSG00000069917 173.66 1804.54 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
35. Rpl4 ENSMUSG00000032399 172.75 1795.08 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
36. Rps20 ENSMUSG00000028234 160.93 1672.26 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
37. Eif4g2 ENSMUSG00000005610 156.84 1629.76 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Hbb-bh1 ENSMUSG00000052217 155.93 1620.30 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
39. Fkbp1a ENSMUSG00000032966 155.02 1610.85 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
40. Chchd2 ENSMUSG00000070493 153.66 1596.71 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. Rpl23 ENSMUSG00000071415 147.30 1530.63 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. Rps26 ENSMUSG00000025362 146.84 1525.85 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
43. Eef1b2 ENSMUSG00000025967 145.48 1511.71 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Eif5a ENSMUSG00000078812 144.57 1502.26 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
45. Pbx1 ENSMUSG00000052534 144.57 1502.26 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
46. Hnrnpc ENSMUSG00000060373 142.75 1483.35 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
47. Banf1 ENSMUSG00000024844 140.02 1454.98 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
48. Set ENSMUSG00000054766 136.39 1417.26 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
49. Itga6 ENSMUSG00000027111 134.11 1393.57 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
50. Atp5g3 ENSMUSG00000018770 130.48 1355.85 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
51. Rpl18a ENSMUSG00000045128 130.02 1351.07 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
52. Ywhab ENSMUSG00000018326 129.11 1341.61 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
53. Grb10 ENSMUSG00000020176 125.02 1299.11 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
54. Lbh ENSMUSG00000024063 122.75 1275.52 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
55. Ngfrap1 120.93 1256.61 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
56. Myl6 ENSMUSG00000090841 120.02 1247.15 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
57. Peg3 ENSMUSG00000002265 118.65 1232.92 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
58. Hsp90aa1 ENSMUSG00000021270 118.20 1228.24 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
59. Gm17132 ENSMUSG00000061331 115.93 1204.65 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
60. Pcbp1 ENSMUSG00000051695 114.56 1190.42 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
61. Gm5805 ENSMUSG00000061848 112.29 1166.83 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
62. Tsc22d1 ENSMUSG00000022010 112.29 1166.83 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
63. Ybx1 ENSMUSG00000028639 111.84 1162.15 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
64. Paics ENSMUSG00000029247 109.11 1133.79 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
65. Rplp1 ENSMUSG00000007892 107.29 1114.87 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
66. Rrm2 ENSMUSG00000020649 107.29 1114.87 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
67. mt-Rnr1 ENSMUSG00000064337 106.83 1110.09 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
68. Rps5 ENSMUSG00000012848 105.47 1095.96 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
69. Gpc3 ENSMUSG00000055653 104.11 1081.83 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
70. Rps4x ENSMUSG00000031320 102.74 1067.59 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
71. Cdk4 ENSMUSG00000006728 101.83 1058.14 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
72. Col3a1 ENSMUSG00000026043 101.38 1053.46 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
73. Ran ENSMUSG00000029430 101.38 1053.46 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
74. Wbp5 100.92 1048.68 WW domain binding protein 5
75. Rpl32 ENSMUSG00000057841 99.11 1029.87 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
76. Hmgn1 ENSMUSG00000040681 95.01 987.27 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
77. Sparc ENSMUSG00000018593 94.56 982.59 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
78. Tecr ENSMUSG00000031708 94.56 982.59 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
79. Pabpc1 ENSMUSG00000022283 94.11 977.92 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
80. Rps3a1 ENSMUSG00000028081 93.20 968.46 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
81. Ago2 ENSMUSG00000036698 92.74 963.68 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
82. Hnrnpa2b1 ENSMUSG00000004980 92.29 959.01 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
83. Sfrp1 ENSMUSG00000031548 91.83 954.23 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
84. Eef2 ENSMUSG00000034994 91.38 949.55 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
85. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 91.38 949.55 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
86. U2af2 ENSMUSG00000030435 90.47 940.09 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
87. Rpl8 ENSMUSG00000003970 89.56 930.64 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
88. Cox8a ENSMUSG00000035885 89.10 925.86 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
89. Rpl37 ENSMUSG00000041841 88.20 916.51 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
90. Anp32b ENSMUSG00000028333 86.83 902.27 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
91. Fkbp4 ENSMUSG00000030357 86.38 897.59 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
92. Gm14586 ENSMUSG00000083621 86.38 897.59 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
93. Lamp1 ENSMUSG00000031447 86.38 897.59 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
94. Ddx5 ENSMUSG00000020719 84.10 873.90 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
95. Meg3 ENSMUSG00000021268 83.65 869.23 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
96. Tmsb4x ENSMUSG00000049775 82.29 855.09 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
97. Trim28 ENSMUSG00000005566 79.56 826.73 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
98. Capns1 ENSMUSG00000001794 79.10 821.95 calpain, small subunit 1 [Source:MGI Symbol;Acc:MGI:88266]
99. Gm14303 ENSMUSG00000081344 79.10 821.95 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
100. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 79.10 821.95 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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