Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s47.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4054.74 42125.26 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 4014.29 41705.02 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2445.53 25406.96 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2393.58 24867.24 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 2259.95 23478.94 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 2161.60 22457.17 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1386.74 14407.04 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 974.33 10122.45 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. H19 ENSMUSG00000000031 969.57 10073.00 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. Actb ENSMUSG00000029580 939.03 9755.71 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Nd2 ENSMUSG00000064345 891.84 9265.45 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. Mdk ENSMUSG00000027239 801.43 8326.17 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. mt-Co3 ENSMUSG00000064358 791.12 8219.06 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. mt-Rnr2 ENSMUSG00000064339 783.19 8136.67 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
15. Eef1a1 ENSMUSG00000037742 610.29 6340.39 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. mt-Nd5 ENSMUSG00000064367 589.28 6122.11 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
17. Igf2 ENSMUSG00000048583 538.52 5594.76 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Gm10800 ENSMUSG00000075014 519.48 5396.95 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
19. Hbb-y ENSMUSG00000052187 447.31 4647.17 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. Gm13340 ENSMUSG00000083563 410.43 4264.02 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Rpsa ENSMUSG00000032518 329.93 3427.69 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
22. Tubb5 ENSMUSG00000001525 312.88 3250.55 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Hmga2 ENSMUSG00000056758 288.29 2995.09 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
24. Cfl1 ENSMUSG00000056201 283.14 2941.58 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Hba-a1 ENSMUSG00000069919 269.65 2801.43 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
26. Hba-x ENSMUSG00000055609 262.12 2723.20 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
27. Tuba1b ENSMUSG00000023004 252.21 2620.25 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
28. Nedd4 ENSMUSG00000032216 233.17 2422.44 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
29. Npm1 ENSMUSG00000057113 233.17 2422.44 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
30. Pkm ENSMUSG00000032294 220.48 2290.60 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
31. Ubb ENSMUSG00000019505 209.38 2175.28 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Hsp90ab1 ENSMUSG00000023944 200.26 2080.53 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Rpl4 ENSMUSG00000032399 185.59 1928.12 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
34. Tpt1 ENSMUSG00000060126 181.62 1886.88 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Eif4g2 ENSMUSG00000005610 164.17 1705.59 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Rps20 ENSMUSG00000028234 164.17 1705.59 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
37. Fkbp1a ENSMUSG00000032966 159.02 1652.08 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
38. Rps26 ENSMUSG00000025362 157.83 1639.72 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
39. Eif5a ENSMUSG00000078812 152.67 1586.11 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
40. Eef1b2 ENSMUSG00000025967 139.59 1450.22 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
41. Pbx1 ENSMUSG00000052534 137.60 1429.55 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
42. Chchd2 ENSMUSG00000070493 136.41 1417.18 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
43. Hnrnpc ENSMUSG00000060373 133.24 1384.25 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
44. Rpl23 ENSMUSG00000071415 131.26 1363.68 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
45. Hba-a2 ENSMUSG00000069917 127.29 1322.43 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
46. Rpl18a ENSMUSG00000045128 127.29 1322.43 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
47. Atp5g3 ENSMUSG00000018770 124.12 1289.50 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
48. Ywhab ENSMUSG00000018326 122.93 1277.14 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
49. Grb10 ENSMUSG00000020176 119.76 1244.20 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
50. Myl6 ENSMUSG00000090841 116.59 1211.27 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
51. Col3a1 ENSMUSG00000026043 115.40 1198.91 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
52. Paics ENSMUSG00000029247 115.00 1194.75 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
53. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 113.02 1174.18 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
54. Cdkn1c ENSMUSG00000037664 111.03 1153.51 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
55. Hbb-bh1 ENSMUSG00000052217 110.24 1145.30 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
56. Rrm2 ENSMUSG00000020649 110.24 1145.30 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
57. Banf1 ENSMUSG00000024844 109.45 1137.09 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
58. Gm5805 ENSMUSG00000061848 105.88 1100.00 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
59. Rps4x ENSMUSG00000031320 105.48 1095.85 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
60. Hmgn1 ENSMUSG00000040681 101.91 1058.76 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
61. Trim28 ENSMUSG00000005566 101.91 1058.76 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
62. Eef2 ENSMUSG00000034994 99.93 1038.19 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
63. Hsp90aa1 ENSMUSG00000021270 99.53 1034.03 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
64. Ngfrap1 99.53 1034.03 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
65. mt-Rnr1 ENSMUSG00000064337 99.53 1034.03 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
66. Rplp1 ENSMUSG00000007892 99.14 1029.98 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
67. Ran ENSMUSG00000029430 98.34 1021.67 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
68. Rps3a1 ENSMUSG00000028081 97.16 1009.41 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
69. Col1a1 ENSMUSG00000001506 95.97 997.05 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
70. Tmsb10 ENSMUSG00000079523 94.78 984.68 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
71. Ybx1 ENSMUSG00000028639 94.78 984.68 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
72. Pcbp1 ENSMUSG00000051695 94.38 980.53 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
73. Cdk4 ENSMUSG00000006728 93.98 976.37 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
74. Peg3 ENSMUSG00000002265 93.98 976.37 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
75. Hnrnpa2b1 ENSMUSG00000004980 92.00 955.80 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
76. Rps5 ENSMUSG00000012848 91.60 951.65 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
77. Itga6 ENSMUSG00000027111 90.41 939.28 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
78. Ddx5 ENSMUSG00000020719 90.02 935.23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
79. Rpl8 ENSMUSG00000003970 90.02 935.23 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
80. Crabp1 ENSMUSG00000032291 89.22 926.92 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
81. Kpnb1 ENSMUSG00000001440 88.83 922.87 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
82. Set ENSMUSG00000054766 88.83 922.87 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
83. Rpl32 ENSMUSG00000057841 88.43 918.71 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
84. U2af2 ENSMUSG00000030435 88.03 914.56 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
85. Cox8a ENSMUSG00000035885 86.84 902.19 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
86. Gas1 ENSMUSG00000052957 86.84 902.19 growth arrest specific 1 [Source:MGI Symbol;Acc:MGI:95655]
87. Pabpc1 ENSMUSG00000022283 86.84 902.19 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
88. Gpc3 ENSMUSG00000055653 86.45 898.14 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
89. Ywhae ENSMUSG00000020849 86.45 898.14 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
90. Hnrnpa0 ENSMUSG00000007836 86.05 893.99 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
91. Gm17132 ENSMUSG00000061331 84.86 881.62 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
92. Meg3 ENSMUSG00000021268 84.07 873.42 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
93. Fscn1 ENSMUSG00000029581 83.28 865.21 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
94. Igfbp4 ENSMUSG00000017493 83.28 865.21 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
95. Ssbp3 ENSMUSG00000061887 83.28 865.21 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
96. Ago2 ENSMUSG00000036698 82.88 861.05 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
97. Rpl39-ps ENSMUSG00000036305 82.09 852.84 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
98. Tmsb4x ENSMUSG00000049775 81.69 848.69 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
99. Rps15 ENSMUSG00000063457 80.10 832.17 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
100. Ywhaz ENSMUSG00000022285 80.10 832.17 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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