Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s46.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4263.46 44300.30 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 4155.77 43181.33 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2409.61 25037.52 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2304.28 23943.07 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 2235.89 23232.45 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 2051.16 21312.97 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1384.30 14383.84 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1083.49 11258.21 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Nd3 ENSMUSG00000064360 858.93 8924.88 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Co3 ENSMUSG00000064358 830.11 8625.42 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Mdk ENSMUSG00000027239 786.08 8167.92 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. Actb ENSMUSG00000029580 736.56 7653.37 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Eef1a1 ENSMUSG00000037742 699.62 7269.54 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Hbb-y ENSMUSG00000052187 688.35 7152.43 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
15. mt-Nd2 ENSMUSG00000064345 633.32 6580.63 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. Igf2 ENSMUSG00000048583 599.52 6229.43 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. mt-Rnr2 ENSMUSG00000064339 460.38 4783.67 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
18. Hba-a1 ENSMUSG00000069919 400.90 4165.63 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
19. Hba-x ENSMUSG00000055609 396.97 4124.79 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
20. Gm13340 ENSMUSG00000083563 368.94 3833.54 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Rpsa ENSMUSG00000032518 339.06 3523.07 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
22. Cfl1 ENSMUSG00000056201 288.23 2994.91 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. Tuba1b ENSMUSG00000023004 282.47 2935.06 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. mt-Nd5 ENSMUSG00000064367 281.68 2926.85 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
25. Tubb5 ENSMUSG00000001525 276.18 2869.70 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Pkm ENSMUSG00000032294 256.53 2665.52 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Npm1 ENSMUSG00000057113 249.19 2589.26 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Hmga2 ENSMUSG00000056758 234.52 2436.83 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
29. Tpt1 ENSMUSG00000060126 212.50 2208.02 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
30. Nedd4 ENSMUSG00000032216 211.46 2197.22 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Rpl4 ENSMUSG00000032399 205.43 2134.56 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
32. Ubb ENSMUSG00000019505 203.60 2115.55 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Hba-a2 ENSMUSG00000069917 191.28 1987.53 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
34. Rps20 ENSMUSG00000028234 189.18 1965.71 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
35. Cdkn1c ENSMUSG00000037664 182.90 1900.46 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
36. Eif4g2 ENSMUSG00000005610 177.39 1843.21 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Hsp90ab1 ENSMUSG00000023944 171.37 1780.65 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Gm10800 ENSMUSG00000075014 166.39 1728.91 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
39. Rpl23 ENSMUSG00000071415 163.51 1698.98 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
40. Fkbp1a ENSMUSG00000032966 159.05 1652.64 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
41. Hbb-bh1 ENSMUSG00000052217 157.48 1636.33 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
42. Rps26 ENSMUSG00000025362 150.93 1568.27 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
43. Chchd2 ENSMUSG00000070493 141.23 1467.48 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
44. Eef1b2 ENSMUSG00000025967 140.19 1456.67 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
45. Eif5a ENSMUSG00000078812 139.92 1453.87 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
46. Rpl18a ENSMUSG00000045128 139.92 1453.87 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
47. Atp5g3 ENSMUSG00000018770 136.78 1421.24 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
48. Col3a1 ENSMUSG00000026043 134.68 1399.42 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
49. Pbx1 ENSMUSG00000052534 131.01 1361.28 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
50. Grb10 ENSMUSG00000020176 130.75 1358.58 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
51. Ywhab ENSMUSG00000018326 124.46 1293.23 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
52. Hnrnpc ENSMUSG00000060373 123.68 1285.12 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
53. Banf1 ENSMUSG00000024844 123.15 1279.61 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
54. Rplp1 ENSMUSG00000007892 122.63 1274.21 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
55. Hsp90aa1 ENSMUSG00000021270 121.32 1260.60 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
56. Gm5805 ENSMUSG00000061848 117.91 1225.17 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
57. Rps4x ENSMUSG00000031320 114.77 1192.54 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
58. Rrm2 ENSMUSG00000020649 114.24 1187.03 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
59. Trim28 ENSMUSG00000005566 113.98 1184.33 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
60. Paics ENSMUSG00000029247 113.20 1176.23 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
61. Tmsb10 ENSMUSG00000079523 112.41 1168.02 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
62. Col1a1 ENSMUSG00000001506 110.58 1149.00 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
63. Ndufa12 ENSMUSG00000020022 110.31 1146.20 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
64. Myl6 ENSMUSG00000090841 109.79 1140.79 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
65. Pcbp1 ENSMUSG00000051695 105.34 1094.56 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
66. Rpl39-ps ENSMUSG00000036305 105.07 1091.75 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
67. Eef2 ENSMUSG00000034994 103.50 1075.44 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
68. Hmgn1 ENSMUSG00000040681 100.62 1045.51 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
69. Hnrnpa2b1 ENSMUSG00000004980 99.31 1031.90 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
70. Ran ENSMUSG00000029430 99.31 1031.90 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
71. Ngfrap1 98.52 1023.69 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
72. Peg3 ENSMUSG00000002265 98.00 1018.29 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
73. Rpl37 ENSMUSG00000041841 96.95 1007.38 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
74. Meg3 ENSMUSG00000021268 96.69 1004.68 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
75. Rpl32 ENSMUSG00000057841 96.69 1004.68 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
76. Tecr ENSMUSG00000031708 96.43 1001.97 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
77. Set ENSMUSG00000054766 95.64 993.77 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
78. Ddx5 ENSMUSG00000020719 95.12 988.36 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
79. Pabpc1 ENSMUSG00000022283 94.59 982.86 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
80. Tmsb4x ENSMUSG00000049775 93.81 974.75 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
81. Rps5 ENSMUSG00000012848 93.54 971.95 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
82. U2af2 ENSMUSG00000030435 92.76 963.84 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
83. Gm14303 ENSMUSG00000081344 92.50 961.14 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
84. Ybx1 ENSMUSG00000028639 91.71 952.93 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
85. Ago2 ENSMUSG00000036698 90.66 942.02 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
86. Cdk4 ENSMUSG00000006728 90.66 942.02 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
87. Rps3a1 ENSMUSG00000028081 90.66 942.02 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
88. Cox8a ENSMUSG00000035885 90.40 939.32 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
89. Rpl8 ENSMUSG00000003970 89.35 928.41 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
90. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 88.57 920.30 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
91. Ywhae ENSMUSG00000020849 87.78 912.10 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
92. Rps15 ENSMUSG00000063457 87.52 909.39 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
93. Anp32b ENSMUSG00000028333 86.99 903.89 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
94. Gm9844 ENSMUSG00000091955 86.99 903.89 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
95. Itga6 ENSMUSG00000027111 85.16 884.87 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
96. Igfbp4 ENSMUSG00000017493 84.64 879.47 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
97. Ywhaz ENSMUSG00000022285 84.11 873.96 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
98. Rpl41 ENSMUSG00000093674 83.33 865.86 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
99. Rpl26 ENSMUSG00000060938 82.28 854.95 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
100. Tpm4 ENSMUSG00000031799 81.75 849.44 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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