Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s45.

Sample reads: 96,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4271.16 44378.35 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3854.63 40050.50 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2223.10 23098.53 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2131.06 22142.21 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 2048.85 21288.03 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 2040.99 21206.36 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1333.78 13858.29 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1119.42 11631.03 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Nd3 ENSMUSG00000064360 914.49 9501.76 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Co3 ENSMUSG00000064358 812.23 8439.26 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Mdk ENSMUSG00000027239 735.13 7638.17 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. Actb ENSMUSG00000029580 701.31 7286.77 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Rnr2 ENSMUSG00000064339 643.88 6690.06 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
14. Igf2 ENSMUSG00000048583 636.01 6608.29 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Eef1a1 ENSMUSG00000037742 623.82 6481.64 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. mt-Nd2 ENSMUSG00000064345 607.30 6309.99 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Hbb-y ENSMUSG00000052187 568.36 5905.39 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Hba-x ENSMUSG00000055609 409.85 4258.44 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
19. Gm10800 ENSMUSG00000075014 407.10 4229.86 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
20. Gm13340 ENSMUSG00000083563 385.86 4009.18 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Hmga2 ENSMUSG00000056758 371.30 3857.89 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Rpsa ENSMUSG00000032518 321.74 3342.95 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
23. Hba-a1 ENSMUSG00000069919 318.99 3314.38 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
24. Tubb5 ENSMUSG00000001525 306.01 3179.52 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Cfl1 ENSMUSG00000056201 276.51 2873.00 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Tuba1b ENSMUSG00000023004 270.61 2811.70 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. mt-Nd5 ENSMUSG00000064367 265.50 2758.61 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
28. Npm1 ENSMUSG00000057113 252.52 2623.74 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
29. Pkm ENSMUSG00000032294 214.36 2227.25 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
30. Ubb ENSMUSG00000019505 205.71 2137.37 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Nedd4 ENSMUSG00000032216 201.38 2092.39 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
32. Tpt1 ENSMUSG00000060126 194.70 2022.98 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
33. Hsp90ab1 ENSMUSG00000023944 190.37 1977.99 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Cdkn1c ENSMUSG00000037664 187.62 1949.42 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
35. Eif4g2 ENSMUSG00000005610 179.36 1863.59 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Rpl4 ENSMUSG00000032399 174.64 1814.55 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Set ENSMUSG00000054766 173.85 1806.34 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
38. Pbx1 ENSMUSG00000052534 173.06 1798.13 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
39. Rps20 ENSMUSG00000028234 159.69 1659.22 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
40. Rpl23 ENSMUSG00000071415 156.15 1622.43 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
41. Rps26 ENSMUSG00000025362 149.47 1553.03 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
42. Eif5a ENSMUSG00000078812 145.14 1508.04 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
43. Hba-a2 ENSMUSG00000069917 142.78 1483.52 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
44. Chchd2 ENSMUSG00000070493 141.99 1475.31 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
45. Fkbp1a ENSMUSG00000032966 141.99 1475.31 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
46. Eef1b2 ENSMUSG00000025967 136.88 1422.22 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
47. Grb10 ENSMUSG00000020176 132.16 1373.17 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
48. Hsp90aa1 ENSMUSG00000021270 129.80 1348.65 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
49. Atp5g3 ENSMUSG00000018770 127.83 1328.18 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
50. Ywhab ENSMUSG00000018326 127.05 1320.08 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
51. Hbb-bh1 ENSMUSG00000052217 123.11 1279.14 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
52. Rpl18a ENSMUSG00000045128 122.72 1275.09 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
53. Rplp1 ENSMUSG00000007892 118.00 1226.05 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
54. Hnrnpc ENSMUSG00000060373 117.61 1222.00 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
55. Gm14303 ENSMUSG00000081344 115.25 1197.47 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
56. mt-Rnr1 ENSMUSG00000064337 114.46 1189.27 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
57. Ran ENSMUSG00000029430 114.07 1185.21 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
58. Col3a1 ENSMUSG00000026043 112.10 1164.75 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
59. Peg3 ENSMUSG00000002265 110.13 1144.28 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
60. Col1a1 ENSMUSG00000001506 109.35 1136.17 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
61. Rps3a1 ENSMUSG00000028081 108.95 1132.02 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
62. Rps4x ENSMUSG00000031320 108.17 1123.91 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
63. U2af2 ENSMUSG00000030435 108.17 1123.91 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
64. Paics ENSMUSG00000029247 106.99 1111.65 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
65. Pcbp1 ENSMUSG00000051695 106.59 1107.49 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
66. Ybx1 ENSMUSG00000028639 105.41 1095.23 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
67. Gm5805 ENSMUSG00000061848 104.23 1082.97 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
68. Trim28 ENSMUSG00000005566 104.23 1082.97 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
69. Banf1 ENSMUSG00000024844 103.84 1078.92 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
70. Ago2 ENSMUSG00000036698 102.66 1066.66 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
71. Cdk4 ENSMUSG00000006728 102.27 1062.61 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
72. Myl6 ENSMUSG00000090841 101.87 1058.45 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
73. Crabp1 ENSMUSG00000032291 101.48 1054.40 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
74. Rpl37 ENSMUSG00000041841 101.09 1050.35 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
75. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 98.73 1025.83 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
76. Tmsb10 ENSMUSG00000079523 98.73 1025.83 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
77. Rpl32 ENSMUSG00000057841 97.15 1009.41 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
78. Ywhae ENSMUSG00000020849 96.76 1005.36 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
79. Eef2 ENSMUSG00000034994 95.58 993.10 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
80. Hnrnpa2b1 ENSMUSG00000004980 95.58 993.10 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
81. Hmgn1 ENSMUSG00000040681 95.19 989.05 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
82. Ndufa12 ENSMUSG00000020022 93.61 972.63 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
83. Pabpc1 ENSMUSG00000022283 92.43 960.37 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
84. Tmsb4x ENSMUSG00000049775 92.43 960.37 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
85. Wbp5 92.04 956.32 WW domain binding protein 5
86. Rpl39-ps ENSMUSG00000036305 90.07 935.85 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
87. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 88.89 923.59 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
88. Marcksl1 ENSMUSG00000047945 88.89 923.59 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
89. Ngfrap1 87.32 907.28 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
90. Marcks ENSMUSG00000069662 86.14 895.01 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
91. Kpnb1 ENSMUSG00000001440 84.96 882.75 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
92. Rps5 ENSMUSG00000012848 84.96 882.75 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
93. Rpl8 ENSMUSG00000003970 82.21 854.18 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
94. Ddx39b ENSMUSG00000019432 80.24 833.71 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
95. Cox8a ENSMUSG00000035885 79.45 825.50 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
96. Sparc ENSMUSG00000018593 79.06 821.45 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
97. Morf4l1 ENSMUSG00000062270 78.27 813.24 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
98. Hnrnpa0 ENSMUSG00000007836 77.49 805.14 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
99. Ddx5 ENSMUSG00000020719 76.70 796.93 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
100. Anp32b ENSMUSG00000028333 76.31 792.88 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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