Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s44.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4057.85 42163.94 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 4057.85 42163.94 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2477.27 25740.59 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2370.87 24635.02 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd4 ENSMUSG00000064363 2369.69 24622.76 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Nd1 ENSMUSG00000064341 2054.64 21349.16 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1405.62 14605.39 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 982.99 10213.96 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Nd3 ENSMUSG00000064360 957.57 9949.83 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Actb ENSMUSG00000029580 845.85 8788.98 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. Mdk ENSMUSG00000027239 796.20 8273.08 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. mt-Co3 ENSMUSG00000064358 757.19 7867.74 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. mt-Rnr2 ENSMUSG00000064339 742.41 7714.17 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
14. mt-Nd2 ENSMUSG00000064345 713.45 7413.25 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Eef1a1 ENSMUSG00000037742 643.70 6688.50 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Igf2 ENSMUSG00000048583 609.42 6332.31 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Gm13340 ENSMUSG00000083563 397.80 4133.42 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Hbb-y ENSMUSG00000052187 355.25 3691.30 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
19. Rpsa ENSMUSG00000032518 351.70 3654.41 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Npm1 ENSMUSG00000057113 289.04 3003.33 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Tuba1b ENSMUSG00000023004 283.13 2941.92 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. mt-Nd5 ENSMUSG00000064367 279.00 2899.01 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Tubb5 ENSMUSG00000001525 271.90 2825.23 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
24. Cfl1 ENSMUSG00000056201 258.90 2690.15 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Cdkn1c ENSMUSG00000037664 248.85 2585.73 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
26. Nedd4 ENSMUSG00000032216 241.17 2505.93 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Ubb ENSMUSG00000019505 215.16 2235.66 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Pkm ENSMUSG00000032294 214.57 2229.53 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Tpt1 ENSMUSG00000060126 213.98 2223.40 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
30. Hba-a1 ENSMUSG00000069919 192.10 1996.06 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
31. Hsp90ab1 ENSMUSG00000023944 190.92 1983.79 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Hba-x ENSMUSG00000055609 185.60 1928.52 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
33. Rpl4 ENSMUSG00000032399 183.24 1903.99 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
34. Hmga2 ENSMUSG00000056758 175.55 1824.09 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
35. Eif5a ENSMUSG00000078812 173.19 1799.57 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
36. Eif4g2 ENSMUSG00000005610 171.42 1781.18 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Atp5g3 ENSMUSG00000018770 166.69 1732.03 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
38. Grb10 ENSMUSG00000020176 164.91 1713.53 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
39. Gm10800 ENSMUSG00000075014 161.37 1676.75 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
40. Hnrnpc ENSMUSG00000060373 156.64 1627.60 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
41. Rps20 ENSMUSG00000028234 152.50 1584.58 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
42. Eef1b2 ENSMUSG00000025967 151.91 1578.45 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
43. Fkbp1a ENSMUSG00000032966 151.32 1572.32 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
44. Chchd2 ENSMUSG00000070493 150.73 1566.19 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
45. Rps26 ENSMUSG00000025362 150.73 1566.19 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
46. Rpl23 ENSMUSG00000071415 148.96 1547.80 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
47. Pcbp1 ENSMUSG00000051695 130.63 1357.34 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
48. Pbx1 ENSMUSG00000052534 129.45 1345.08 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
49. Gm5805 ENSMUSG00000061848 128.86 1338.95 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
50. Hmgn1 ENSMUSG00000040681 128.27 1332.82 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
51. Banf1 ENSMUSG00000024844 127.08 1320.45 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
52. Hsp90aa1 ENSMUSG00000021270 125.31 1302.06 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
53. Ran ENSMUSG00000029430 125.31 1302.06 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
54. Rrm2 ENSMUSG00000020649 124.72 1295.93 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
55. Col3a1 ENSMUSG00000026043 124.13 1289.80 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
56. Rps4x ENSMUSG00000031320 122.36 1271.41 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
57. Ywhab ENSMUSG00000018326 118.22 1228.39 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
58. Pabpc1 ENSMUSG00000022283 115.85 1203.76 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
59. Trim28 ENSMUSG00000005566 114.08 1185.37 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
60. Ybx1 ENSMUSG00000028639 114.08 1185.37 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
61. U2af2 ENSMUSG00000030435 112.90 1173.11 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
62. Myl6 ENSMUSG00000090841 106.40 1105.57 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
63. Paics ENSMUSG00000029247 106.40 1105.57 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
64. Rps5 ENSMUSG00000012848 106.40 1105.57 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
65. Rplp1 ENSMUSG00000007892 105.81 1099.44 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
66. Tmsb4x ENSMUSG00000049775 105.81 1099.44 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
67. Rpl18a ENSMUSG00000045128 105.21 1093.21 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
68. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 103.44 1074.81 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
69. Peg3 ENSMUSG00000002265 101.08 1050.29 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
70. Hba-a2 ENSMUSG00000069917 99.89 1037.93 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
71. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 99.30 1031.80 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
72. Ngfrap1 99.30 1031.80 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
73. Rpl8 ENSMUSG00000003970 99.30 1031.80 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
74. Rps3a1 ENSMUSG00000028081 98.71 1025.67 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
75. Hnrnpa2b1 ENSMUSG00000004980 97.53 1013.41 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
76. Marcks ENSMUSG00000069662 96.35 1001.14 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
77. Col1a1 ENSMUSG00000001506 94.57 982.65 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
78. Ndufa12 ENSMUSG00000020022 94.57 982.65 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
79. Crabp1 ENSMUSG00000032291 93.39 970.39 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
80. Gpc3 ENSMUSG00000055653 92.80 964.26 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
81. Hbb-bh1 ENSMUSG00000052217 91.62 952.00 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
82. Anp32b ENSMUSG00000028333 91.03 945.87 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
83. Cox8a ENSMUSG00000035885 89.25 927.37 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
84. Set ENSMUSG00000054766 88.66 921.24 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
85. Eef2 ENSMUSG00000034994 88.07 915.11 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
86. Ywhaz ENSMUSG00000022285 88.07 915.11 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
87. Ddx5 ENSMUSG00000020719 86.30 896.72 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
88. Hnrnph1 ENSMUSG00000007850 86.30 896.72 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
89. Pfn1 ENSMUSG00000018293 86.30 896.72 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
90. Rps9 ENSMUSG00000006333 86.30 896.72 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
91. Lamp1 ENSMUSG00000031447 85.71 890.59 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
92. Wbp5 83.94 872.20 WW domain binding protein 5
93. mt-Rnr1 ENSMUSG00000064337 83.94 872.20 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
94. Ago2 ENSMUSG00000036698 83.34 865.96 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
95. Gm14303 ENSMUSG00000081344 83.34 865.96 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
96. Rpl32 ENSMUSG00000057841 82.75 859.83 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
97. Rpl39-ps ENSMUSG00000036305 81.57 847.57 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
98. H3f3b ENSMUSG00000016559 80.98 841.44 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
99. Sfpq ENSMUSG00000028820 80.98 841.44 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
100. Ywhaq ENSMUSG00000076432 80.98 841.44 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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