Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s43.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3800.21 39484.10 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3542.60 36807.54 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2561.37 26612.58 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2077.87 21589.02 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1863.46 19361.31 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1660.00 17247.36 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1377.22 14309.29 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1049.05 10899.61 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Nd3 ENSMUSG00000064360 920.52 9564.18 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Mdk ENSMUSG00000027239 842.30 8751.48 midkine [Source:MGI Symbol;Acc:MGI:96949]
11. mt-Co3 ENSMUSG00000064358 765.73 7955.92 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Eef1a1 ENSMUSG00000037742 754.25 7836.64 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Igf2 ENSMUSG00000048583 611.49 6353.37 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Actb ENSMUSG00000029580 579.77 6023.80 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. mt-Nd2 ENSMUSG00000064345 558.98 5807.79 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. Gm13340 ENSMUSG00000083563 391.07 4063.21 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Hbb-y ENSMUSG00000052187 382.87 3978.01 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Cfl1 ENSMUSG00000056201 365.91 3801.80 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
19. Tubb5 ENSMUSG00000001525 346.22 3597.22 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
20. Rpsa ENSMUSG00000032518 336.37 3494.88 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. mt-Rnr2 ENSMUSG00000064339 303.56 3153.98 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
22. Tuba1b ENSMUSG00000023004 301.92 3136.94 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Hba-x ENSMUSG00000055609 291.52 3028.89 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
24. Npm1 ENSMUSG00000057113 264.72 2750.44 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Hba-a1 ENSMUSG00000069919 259.80 2699.32 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
26. Nedd4 ENSMUSG00000032216 259.25 2693.60 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Pkm ENSMUSG00000032294 254.33 2642.48 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Tpt1 ENSMUSG00000060126 246.13 2557.29 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
29. Cdkn1c ENSMUSG00000037664 226.98 2358.32 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
30. Hmga2 ENSMUSG00000056758 224.80 2335.67 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
31. Ubb ENSMUSG00000019505 219.87 2284.44 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. mt-Nd5 ENSMUSG00000064367 217.69 2261.79 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
33. Eif4g2 ENSMUSG00000005610 200.73 2085.58 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Rpl4 ENSMUSG00000032399 198.54 2062.83 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Gm10800 ENSMUSG00000075014 193.62 2011.71 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
36. Chchd2 ENSMUSG00000070493 182.68 1898.04 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
37. Hsp90ab1 ENSMUSG00000023944 176.12 1829.88 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Fkbp1a ENSMUSG00000032966 167.91 1744.58 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
39. Rps20 ENSMUSG00000028234 150.41 1562.76 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
40. Grb10 ENSMUSG00000020176 147.13 1528.68 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
41. Hnrnpc ENSMUSG00000060373 141.66 1471.84 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
42. Rrm2 ENSMUSG00000020649 141.11 1466.13 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
43. Eef1b2 ENSMUSG00000025967 136.74 1420.73 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Eif5a ENSMUSG00000078812 136.19 1415.01 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
45. Ywhab ENSMUSG00000018326 136.19 1415.01 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
46. Rpl18a ENSMUSG00000045128 134.00 1392.26 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
47. Hnrnpa2b1 ENSMUSG00000004980 132.91 1380.93 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
48. Hsp90aa1 ENSMUSG00000021270 130.17 1352.46 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
49. Myl6 ENSMUSG00000090841 130.17 1352.46 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
50. Banf1 ENSMUSG00000024844 129.08 1341.14 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
51. Rps26 ENSMUSG00000025362 128.53 1335.42 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
52. Rpl23 ENSMUSG00000071415 127.99 1329.81 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
53. Pcbp1 ENSMUSG00000051695 127.44 1324.10 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
54. Rpl39-ps ENSMUSG00000036305 124.16 1290.02 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
55. Paics ENSMUSG00000029247 121.97 1267.27 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
56. Atp5g3 ENSMUSG00000018770 120.88 1255.94 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
57. Col3a1 ENSMUSG00000026043 120.88 1255.94 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
58. Cdk4 ENSMUSG00000006728 119.24 1238.90 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
59. Ran ENSMUSG00000029430 118.69 1233.19 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
60. Rplp1 ENSMUSG00000007892 118.69 1233.19 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
61. Cdc42 ENSMUSG00000006699 113.77 1182.07 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
62. Rps3a1 ENSMUSG00000028081 113.77 1182.07 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
63. Hmgn1 ENSMUSG00000040681 113.22 1176.35 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
64. Crabp1 ENSMUSG00000032291 108.30 1125.23 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
65. Pbx1 ENSMUSG00000052534 108.30 1125.23 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
66. Tmsb10 ENSMUSG00000079523 107.20 1113.81 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
67. Hba-a2 ENSMUSG00000069917 106.11 1102.48 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
68. Fkbp4 ENSMUSG00000030357 102.83 1068.40 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
69. Ngfrap1 101.73 1056.97 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
70. Ybx1 ENSMUSG00000028639 101.19 1051.36 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
71. Rpl32 ENSMUSG00000057841 100.09 1039.93 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
72. Jund ENSMUSG00000071076, ENSMUSG00000110974 99.55 1034.32 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
73. Rps5 ENSMUSG00000012848 99.55 1034.32 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
74. Rps4x ENSMUSG00000031320 98.45 1022.89 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
75. Trim28 ENSMUSG00000005566 98.45 1022.89 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
76. Hnrnph1 ENSMUSG00000007850 97.90 1017.18 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
77. Rps15 ENSMUSG00000063457 96.26 1000.14 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
78. Ddx5 ENSMUSG00000020719 95.17 988.81 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
79. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 95.17 988.81 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
80. Ywhaz ENSMUSG00000022285 95.17 988.81 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
81. Gm9844 ENSMUSG00000091955 93.53 971.77 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
82. Kpnb1 ENSMUSG00000001440 93.53 971.77 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
83. Rpl37 ENSMUSG00000041841 92.98 966.06 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
84. Ywhae ENSMUSG00000020849 92.98 966.06 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
85. Ndufa12 ENSMUSG00000020022 92.43 960.35 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
86. Cox8a ENSMUSG00000035885 91.34 949.02 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
87. Tmsb4x ENSMUSG00000049775 91.34 949.02 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
88. U2af2 ENSMUSG00000030435 90.79 943.31 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
89. Gm14303 ENSMUSG00000081344 90.25 937.70 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
90. Hbb-bh1 ENSMUSG00000052217 90.25 937.70 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
91. Hnrnpa0 ENSMUSG00000007836 90.25 937.70 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
92. Rpl8 ENSMUSG00000003970 90.25 937.70 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
93. Ddx39b ENSMUSG00000019432 89.70 931.98 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
94. Gm14586 ENSMUSG00000083621 89.70 931.98 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
95. Pabpc1 ENSMUSG00000022283 89.15 926.27 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
96. Maged1 ENSMUSG00000025151 88.61 920.66 melanoma antigen, family D, 1 [Source:MGI Symbol;Acc:MGI:1930187]
97. Acta2 ENSMUSG00000035783 87.51 909.23 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
98. Rps9 ENSMUSG00000006333 87.51 909.23 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
99. Tecr ENSMUSG00000031708 87.51 909.23 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
100. Eef2 ENSMUSG00000034994 85.87 892.19 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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